PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Prupe.5G130600.1.p
Organism
Prunus persica
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Maloideae; Amygdaleae; Prunus
Family bHLH
Protein Properties Length: 451aa    MW: 50419.4 Da    PI: 7.1388
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Prupe.5G130600.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH33.57.6e-11307353455
                         HHHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS
                 HLH   4 ahnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 
                         +h e+Er+RR+++N++f  Lr+++P+       K++ ++ L  A  YI++L+
  Prupe.5G130600.1.p 307 NHVEAERQRREKLNHRFYVLRSVVPNV-----SKMDRSSLLADAASYINQLK 353
                         799***********************6.....5*****************95 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF142153.1E-3722213IPR025610Transcription factor MYC/MYB N-terminal
CDDcd000832.98E-13301357No hitNo description
SuperFamilySSF474591.7E-16302366IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PROSITE profilePS5088815.929303352IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene3DG3DSA:4.10.280.102.7E-16307366IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PfamPF000101.9E-8307352IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SMARTSM003531.9E-14309358IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 451 aa     Download sequence    Send to blast
MEEILSSSSP TNFCQENSST FQKRLQFIFR NRPEWWLYSI FWQASNDSND QVSLSWAGGD  60
FRINRDLATK RSNKVVNNYN PKFGFNNVER RKVVNKDVED LFHEDLVDLA MVDHGDVTDS  120
EWFYFYSVSL TQTFVAGHAS NNVLGRAFCS GGFVWLAGAH ELQFYECERV KEARMHGIQT  180
LVCIATPCGV LELASLDVIK EDCGLVHLSK SLFGSDNNKK VSQEGSCEGN ALVHLLENGM  240
FSGAQKEMTR QGCTKEAAHI NICDSSPDSP SDSVGNFTSE NTANTRSKKK KRSSSTNGAS  300
RASQLLNHVE AERQRREKLN HRFYVLRSVV PNVSKMDRSS LLADAASYIN QLKAKVEELE  360
AKVQEQPKNP KVSNASSIDH QSSQSTSSIV NHPHSSYNNR SVAPLEVDVK ILGSEAMIRV  420
QCPDQDYPYA RLMNALKALG LQFTMQAYQV *
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
4rqw_A4e-25152133192Transcription factor MYC3
4rqw_B4e-25152133192Transcription factor MYC3
4rs9_A4e-25152133192Transcription factor MYC3
4yz6_A4e-25152133192Transcription factor MYC3
Search in ModeBase
Cis-element ? help Back to Top
SourceLink
PlantRegMapPrupe.5G130600.1.p
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_020420452.10.0transcription factor MYC3
TrEMBLA0A251P7Q90.0A0A251P7Q9_PRUPE; Uncharacterized protein
STRINGXP_008245390.10.0(Prunus mume)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF84134116
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G00870.11e-51bHLH family protein