PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Prupe.5G105800.1.p
Common NamePRUPE_ppa016196mg
Organism
Prunus persica
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Maloideae; Amygdaleae; Prunus
Family MYB
Protein Properties Length: 325aa    MW: 36923.6 Da    PI: 7.9285
Description MYB family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Prupe.5G105800.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding54.72.4e-171461148
                        TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS
     Myb_DNA-binding  1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48
                        +g W++eEde+l+++++ +G  +W+++++  g+ R++k+c++rw++yl
  Prupe.5G105800.1.p 14 KGLWSPEEDEKLIRYITTYGHCCWRKVPEQAGLQRCGKSCRLRWLNYL 61
                        678*******************************************97 PP
2Myb_DNA-binding50.25.8e-1667111147
                         TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHH CS
     Myb_DNA-binding   1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqky 47 
                         rg +T+eE++l+++++   G++ W+ Ia++++ gRt++++k++w+++
  Prupe.5G105800.1.p  67 RGGFTPEEEKLIIRLHGVVGNR-WAHIAKCLP-GRTDNEIKNYWNSW 111
                         788*******************.*********.************98 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:1.10.10.604.1E-25664IPR009057Homeodomain-like
PROSITE profilePS5129416.256961IPR017930Myb domain
SuperFamilySSF466893.74E-2912108IPR009057Homeodomain-like
SMARTSM007172.9E-131363IPR001005SANT/Myb domain
PfamPF002491.4E-151461IPR001005SANT/Myb domain
CDDcd001672.48E-111761No hitNo description
PROSITE profilePS5129423.662116IPR017930Myb domain
Gene3DG3DSA:1.10.10.607.8E-2565116IPR009057Homeodomain-like
SMARTSM007173.3E-1666114IPR001005SANT/Myb domain
PfamPF002491.2E-1467111IPR001005SANT/Myb domain
CDDcd001672.46E-1270112No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 325 aa     Download sequence    Send to blast
MGHHYCCKQR KVKKGLWSPE EDEKLIRYIT TYGHCCWRKV PEQAGLQRCG KSCRLRWLNY  60
LRPDIKRGGF TPEEEKLIIR LHGVVGNRWA HIAKCLPGRT DNEIKNYWNS WIKKKLEKPS  120
SPPTTSPPTI DHHQQHNYQM VCNFPNHQDF VNQNFMTKPR DQTLYPSPFP PFMFDAASAD  180
DIQANNINAQ AAEHFPIGVS NSRNGTWILD QPQHHHQVQA LPSSTSPFTN INMDAHFLPA  240
LVGPTIGNNN MVPIEVESCN NIDEEGKISM ECLQSSTQEL NALVRPRQAQ HCSSSSFHFW  300
DSVEAPSSSN MSSANILSSF PSYL*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1a5j_A2e-28141177109B-MYB
Search in ModeBase
Cis-element ? help Back to Top
SourceLink
PlantRegMapPrupe.5G105800.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_007210205.10.0transcription repressor MYB4
TrEMBLM5WCE00.0M5WCE0_PRUPE; Uncharacterized protein
STRINGEMJ114040.0(Prunus persica)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF41123358
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G63910.11e-71myb domain protein 103