PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Prupe.5G104600.2.p | ||||||||
Common Name | PRUPE_ppa002081mg | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Maloideae; Amygdaleae; Prunus
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Family | TALE | ||||||||
Protein Properties | Length: 720aa MW: 80742.1 Da PI: 6.7993 | ||||||||
Description | TALE family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | Homeobox | 26.9 | 8.2e-09 | 469 | 506 | 19 | 54 |
HHH..SSS--HHHHHHHHHHCTS-HHHHHHHHHHHHHH CS Homeobox 19 Fek..nrypsaeereeLAkklgLterqVkvWFqNrRak 54 Fe ++yps ++ LA+++gL+ +qV++WF N R + Prupe.5G104600.2.p 469 FEHflHPYPSDVDKHILARQTGLSRSQVSNWFINARVR 506 554459******************************88 PP | |||||||
2 | BELL | 113.8 | 9.4e-37 | 331 | 401 | 2 | 72 |
BELL 2 rqelqkkkakLlslleeVdkrYkqyveqlqtvissFeavaglgsakpYtslAlkaiSrhFrcLkdaiaeqi 72 + elqk+k++Lls+leeV++rYk+y++q+++v+ssFe+vag g+a++Y +lA ka+SrhFr+Lkd i++qi Prupe.5G104600.2.p 331 FVELQKRKTRLLSMLEEVERRYKHYCDQMKAVVSSFETVAGAGAATVYSALAAKAMSRHFRSLKDGIVNQI 401 679*******************************************************************8 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SMART | SM00574 | 1.5E-55 | 261 | 399 | IPR006563 | POX domain |
Pfam | PF07526 | 6.0E-47 | 267 | 397 | IPR006563 | POX domain |
PROSITE profile | PS50071 | 12.179 | 447 | 510 | IPR001356 | Homeobox domain |
CDD | cd00086 | 3.51E-11 | 450 | 511 | No hit | No description |
SMART | SM00389 | 5.8E-9 | 450 | 514 | IPR001356 | Homeobox domain |
SuperFamily | SSF46689 | 6.84E-17 | 451 | 516 | IPR009057 | Homeodomain-like |
Gene3D | G3DSA:1.10.10.60 | 1.4E-27 | 453 | 516 | IPR009057 | Homeodomain-like |
Pfam | PF05920 | 9.8E-18 | 467 | 506 | IPR008422 | Homeobox KN domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0048481 | Biological Process | plant ovule development | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0005829 | Cellular Component | cytosol | ||||
GO:0009506 | Cellular Component | plasmodesma | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 720 aa Download sequence Send to blast |
MAGQLSEAKP RNMVSSSVGF CYSDVSSNPT IHQTQFTNQI QDFGSNPEIF NLTTGMEMIG 60 FPKQNESNNN SAMWKAGFFG KPGNHQAGPS SSKTINESTS SDFYHHQPEF NNKQPDFSTG 120 ISETSSDHHQ NLMVGPQHQD SSGAWQENRF LVDDSSLRCV FPCEGNERPS QGLSLSLSST 180 NPSNIGLQSF ELRQTNQHQP HQQDQQDDDD EENDDHMRFI SSASRDSVGL FGKPSANMQQ 240 QMNMMQDGFL GKATASSSLH PEGLFHLRNS KYLAPAQQLL NEFCSLGTKP STDHHHPSKQ 300 KPHKNKLWEQ EDNGTTSSSR NKQSNIYSLE FVELQKRKTR LLSMLEEVER RYKHYCDQMK 360 AVVSSFETVA GAGAATVYSA LAAKAMSRHF RSLKDGIVNQ IQATRKAMGE KDPVAPGTTR 420 GETPRLRILD QTLRQQRAFQ QMNMMESHPW RPQRGLPERS VSVLRAWLFE HFLHPYPSDV 480 DKHILARQTG LSRSQVSNWF INARVRLWKP MVEEMYLEET KERENNMNNM TSSDGITTDL 540 GDSSRSGQNP LHTRPEDKKP TPDQLVRIDS ECLSSIITNP EKNHDSRSSK STLLNHHMHP 600 QQSFGRVNES FGTMELDFSS YNHHQQHSGG TVSYANDHHH NPNQGFNGGG VSLTLGLQQH 660 GGNGVSLAFS PASQSSLFYP RDHIEECQPV QYSLLDGEGQ NTLPYRNLMG AQLLHDLAG* |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
3k2a_A | 3e-15 | 456 | 514 | 5 | 63 | Homeobox protein Meis2 |
3k2a_B | 3e-15 | 456 | 514 | 5 | 63 | Homeobox protein Meis2 |
Search in ModeBase |
Expression -- Description ? help Back to Top | ||||||
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Source | Description | |||||
Uniprot | DEVELOPMENTAL STAGE: Early expression is detected in the inflorescence apex of developing flowers and also in the ovule primordium and the integuments. {ECO:0000269|PubMed:8521490}. | |||||
Uniprot | TISSUE SPECIFICITY: Expressed in both floral and vegetative tissues. {ECO:0000269|PubMed:8521490}. |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Plays a major role in ovule patterning and in determination of integument identity via its interaction with MADS-box factors. Formation of complex with AG-SEP dimers negatively regulates the carpel identity process and favors the maintenance of ovule identity. BEL1-STM complex maintains the indeterminacy of the inflorescence meristem. Required, with SPL, for cytokinin-induced PIN1 expression in ovules (PubMed:22786869). {ECO:0000269|PubMed:12244239, ECO:0000269|PubMed:17693535, ECO:0000269|PubMed:22786869}. |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Prupe.5G104600.2.p |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_007210325.1 | 0.0 | homeobox protein BEL1 homolog | ||||
Refseq | XP_020419768.1 | 0.0 | homeobox protein BEL1 homolog | ||||
Swissprot | Q38897 | 1e-141 | BEL1_ARATH; Homeobox protein BEL1 homolog | ||||
TrEMBL | M5WCS4 | 0.0 | M5WCS4_PRUPE; Uncharacterized protein | ||||
STRING | EMJ11524 | 0.0 | (Prunus persica) |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT5G41410.1 | 1e-143 | TALE family protein |
Link Out ? help Back to Top | |
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Phytozome | Prupe.5G104600.2.p |
Entrez Gene | 18776411 |
Publications ? help Back to Top | |||
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