PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Prupe.5G090500.1.p | ||||||||
Common Name | PRUPE_ppa021197mg | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Maloideae; Amygdaleae; Prunus
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Family | ERF | ||||||||
Protein Properties | Length: 241aa MW: 27217.8 Da PI: 8.061 | ||||||||
Description | ERF family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | AP2 | 53.7 | 5.2e-17 | 59 | 110 | 1 | 55 |
AP2 1 sgykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkkleg 55 + y+GVr++ + +Wv+e r+p++ + r++lg++ tae+Aa+a++ a+++++g Prupe.5G090500.1.p 59 PVYRGVRRRN-NDKWVCEMREPKKT--KSRIWLGTYPTAEMAARAHDVAALAFRG 110 68*****887.8*********9654..4************************998 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Pfam | PF00847 | 8.5E-13 | 59 | 110 | IPR001471 | AP2/ERF domain |
Gene3D | G3DSA:3.30.730.10 | 7.4E-31 | 60 | 120 | IPR001471 | AP2/ERF domain |
SMART | SM00380 | 4.4E-29 | 60 | 124 | IPR001471 | AP2/ERF domain |
SuperFamily | SSF54171 | 1.11E-21 | 60 | 120 | IPR016177 | DNA-binding domain |
PROSITE profile | PS51032 | 22.589 | 60 | 118 | IPR001471 | AP2/ERF domain |
PRINTS | PR00367 | 1.3E-7 | 61 | 72 | IPR001471 | AP2/ERF domain |
CDD | cd00018 | 4.38E-28 | 61 | 120 | No hit | No description |
PRINTS | PR00367 | 1.3E-7 | 84 | 100 | IPR001471 | AP2/ERF domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0003677 | Molecular Function | DNA binding | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 241 aa Download sequence Send to blast |
MNRFFSHFSD SVDQPESSSL SDATVTTLRA SWSDEDVILA SSRPKKRAGR RVFKETRHPV 60 YRGVRRRNND KWVCEMREPK KTKSRIWLGT YPTAEMAARA HDVAALAFRG KLACLNFPDS 120 AWRLPVPASM DAMDIRRAAA EAAEGFRPVE FGGVSSSSSD EKERMVVQVE EKKKKKDSVK 180 MEKSRSLSLS YWDEEEVFDM PRLLDDMAQG LLLTPPQCLG GDIWDDMGTD ADVKLWSFSN 240 * |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
5wx9_A | 1e-15 | 47 | 118 | 3 | 72 | Ethylene-responsive transcription factor ERF096 |
Search in ModeBase |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Transcriptional activator that binds specifically to the DNA sequence 5'-[AG]CCGAC-3'. Binding to the C-repeat/DRE element mediates cold or dehydration-inducible transcription. CBF/DREB1 factors play a key role in freezing tolerance and cold acclimation. {ECO:0000269|PubMed:11798174}. |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Prupe.5G090500.1.p |
Regulation -- Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | INDUCTION: By high-salt stress. {ECO:0000269|PubMed:11798174}. |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | KC543501 | 0.0 | KC543501.1 Prunus persica CBF/DREB 5 mRNA, complete cds. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_007210989.1 | 1e-177 | dehydration-responsive element-binding protein 1F | ||||
Swissprot | Q9LN86 | 7e-61 | DRE1F_ARATH; Dehydration-responsive element-binding protein 1F | ||||
TrEMBL | M5WS92 | 1e-175 | M5WS92_PRUPE; CBF/DREB 5 | ||||
STRING | EMJ12188 | 1e-176 | (Prunus persica) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Fabids | OGEF243 | 33 | 224 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT5G51990.1 | 2e-54 | C-repeat-binding factor 4 |
Link Out ? help Back to Top | |
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Phytozome | Prupe.5G090500.1.p |
Entrez Gene | 18777414 |
Publications ? help Back to Top | |||
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