PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Prupe.5G087600.4.p | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Maloideae; Amygdaleae; Prunus
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Family | bHLH | ||||||||
Protein Properties | Length: 380aa MW: 42812.9 Da PI: 8.0682 | ||||||||
Description | bHLH family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | HLH | 36 | 1.3e-11 | 310 | 356 | 4 | 55 |
HHHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS HLH 4 ahnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 +h e+Er+RR+++N++f Lr+++P+ K++ ++ L Av YI++L+ Prupe.5G087600.4.p 310 NHVEAERQRREKLNHRFYLLRSVVPNV-----SKMDRSSLLADAVAYINQLK 356 799***********************6.....5*****************95 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Pfam | PF14215 | 8.3E-38 | 22 | 212 | IPR025610 | Transcription factor MYC/MYB N-terminal |
SuperFamily | SSF47459 | 2.62E-16 | 304 | 369 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
CDD | cd00083 | 2.49E-13 | 304 | 360 | No hit | No description |
PROSITE profile | PS50888 | 15.688 | 306 | 355 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
Gene3D | G3DSA:4.10.280.10 | 3.2E-15 | 310 | 368 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
Pfam | PF00010 | 3.1E-9 | 310 | 355 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
SMART | SM00353 | 1.7E-14 | 312 | 361 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0046983 | Molecular Function | protein dimerization activity |
Sequence ? help Back to Top |
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Protein Sequence Length: 380 aa Download sequence Send to blast |
MEAIISSCSS PNFCQENLGT FQQRLQFIFQ NRPEWWLYWI FWQSSKDSND QVSLSWAAGD 60 FRVNSDLASK RNNKVSNNHQ PKFGFNKKVT SREAEEALFD EDMADLEMRL VDHEDVTESE 120 WFYFYSVSLT QSFAAGHATN NILGRAFCSG GFVWLAGAHE LQFYECERVK EARMHGIQTL 180 VCIATPCGVL ELASLDVIKE DWGFVHLSKS LFGSDNNNNN NRVSQQKGSR EGNVLAPLLA 240 NGIFSGSQKE LTRQAAGTKE AAPFNIGGSS PESLSGSVGN FTCENTGNTR SKKRRRSSNN 300 GASRESSLLN HVEAERQRRE KLNHRFYLLR SVVPNVSKMD RSSLLADAVA YINQLKAKVE 360 ELELKTQAQP QNPKKWKWM* |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
4rqw_A | 5e-23 | 15 | 212 | 3 | 192 | Transcription factor MYC3 |
4rqw_B | 5e-23 | 15 | 212 | 3 | 192 | Transcription factor MYC3 |
4rs9_A | 5e-23 | 15 | 212 | 3 | 192 | Transcription factor MYC3 |
4yz6_A | 5e-23 | 15 | 212 | 3 | 192 | Transcription factor MYC3 |
5gnj_A | 4e-23 | 309 | 369 | 7 | 72 | Transcription factor MYC2 |
5gnj_B | 4e-23 | 309 | 369 | 7 | 72 | Transcription factor MYC2 |
5gnj_E | 4e-23 | 309 | 369 | 7 | 72 | Transcription factor MYC2 |
5gnj_F | 4e-23 | 309 | 369 | 7 | 72 | Transcription factor MYC2 |
5gnj_G | 4e-23 | 309 | 369 | 7 | 72 | Transcription factor MYC2 |
5gnj_I | 4e-23 | 309 | 369 | 7 | 72 | Transcription factor MYC2 |
5gnj_M | 4e-23 | 309 | 369 | 7 | 72 | Transcription factor MYC2 |
5gnj_N | 4e-23 | 309 | 369 | 7 | 72 | Transcription factor MYC2 |
Search in ModeBase |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Prupe.5G087600.4.p |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_020419034.1 | 0.0 | transcription factor bHLH14 isoform X1 | ||||
TrEMBL | A0A251P5N9 | 0.0 | A0A251P5N9_PRUPE; Uncharacterized protein | ||||
STRING | XP_008238754.1 | 0.0 | (Prunus mume) |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT4G00870.1 | 5e-44 | bHLH family protein |
Link Out ? help Back to Top | |
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Phytozome | Prupe.5G087600.4.p |