PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Prupe.5G087600.2.p | ||||||||
Common Name | PRUPE_ppa016220mg | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Maloideae; Amygdaleae; Prunus
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Family | bHLH | ||||||||
Protein Properties | Length: 485aa MW: 54417 Da PI: 7.5413 | ||||||||
Description | bHLH family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | HLH | 35.5 | 1.8e-11 | 309 | 355 | 4 | 55 |
HHHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS HLH 4 ahnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 +h e+Er+RR+++N++f Lr+++P+ K++ ++ L Av YI++L+ Prupe.5G087600.2.p 309 NHVEAERQRREKLNHRFYLLRSVVPNV-----SKMDRSSLLADAVAYINQLK 355 799***********************6.....5*****************95 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Pfam | PF14215 | 1.5E-37 | 22 | 212 | IPR025610 | Transcription factor MYC/MYB N-terminal |
SuperFamily | SSF47459 | 4.06E-16 | 303 | 368 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
CDD | cd00083 | 4.48E-13 | 303 | 359 | No hit | No description |
PROSITE profile | PS50888 | 15.688 | 305 | 354 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
Gene3D | G3DSA:4.10.280.10 | 4.6E-15 | 309 | 367 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
Pfam | PF00010 | 4.5E-9 | 309 | 354 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
SMART | SM00353 | 1.7E-14 | 311 | 360 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0046983 | Molecular Function | protein dimerization activity |
Sequence ? help Back to Top |
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Protein Sequence Length: 485 aa Download sequence Send to blast |
MEAIISSCSS PNFCQENLGT FQQRLQFIFQ NRPEWWLYWI FWQSSKDSND QVSLSWAAGD 60 FRVNSDLASK RNNKVSNNHQ PKFGFNKKVT SREAEEALFD EDMADLEMRL VDHEDVTESE 120 WFYFYSVSLT QSFAAGHATN NILGRAFCSG GFVWLAGAHE LQFYECERVK EARMHGIQTL 180 VCIATPCGVL ELASLDVIKE DWGFVHLSKS LFGSDNNNNN NRVSQQKGSR EGNVLAPLLA 240 NGIFSGSQKE LTRQAGTKEA APFNIGGSSP ESLSGSVGNF TCENTGNTRS KKRRRSSNNG 300 ASRESSLLNH VEAERQRREK LNHRFYLLRS VVPNVSKMDR SSLLADAVAY INQLKAKVEE 360 LELKTQAQPQ NPKKVSVNNL DNQCSQSTSS IVDHHSSYNN TKVVPVEVDV KIMGSEAIIR 420 VQCQDQDYPY ARLMNALKGL GLQVYHASIS SVKELMIQDV VARVPYGFTS EEAMRTGIIK 480 RWHN* |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
4rqw_A | 3e-22 | 11 | 212 | 2 | 192 | Transcription factor MYC3 |
4rqw_B | 3e-22 | 11 | 212 | 2 | 192 | Transcription factor MYC3 |
4rs9_A | 3e-22 | 11 | 212 | 2 | 192 | Transcription factor MYC3 |
4yz6_A | 3e-22 | 11 | 212 | 2 | 192 | Transcription factor MYC3 |
5gnj_A | 1e-22 | 308 | 368 | 7 | 72 | Transcription factor MYC2 |
5gnj_B | 1e-22 | 308 | 368 | 7 | 72 | Transcription factor MYC2 |
5gnj_E | 1e-22 | 308 | 368 | 7 | 72 | Transcription factor MYC2 |
5gnj_F | 1e-22 | 308 | 368 | 7 | 72 | Transcription factor MYC2 |
5gnj_G | 1e-22 | 308 | 368 | 7 | 72 | Transcription factor MYC2 |
5gnj_I | 1e-22 | 308 | 368 | 7 | 72 | Transcription factor MYC2 |
5gnj_M | 1e-22 | 308 | 368 | 7 | 72 | Transcription factor MYC2 |
5gnj_N | 1e-22 | 308 | 368 | 7 | 72 | Transcription factor MYC2 |
Search in ModeBase |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Prupe.5G087600.2.p |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_020419035.1 | 0.0 | transcription factor bHLH14 isoform X2 | ||||
TrEMBL | A0A251P5N3 | 0.0 | A0A251P5N3_PRUPE; Uncharacterized protein | ||||
STRING | XP_008238754.1 | 0.0 | (Prunus mume) |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT4G00870.1 | 2e-59 | bHLH family protein |
Link Out ? help Back to Top | |
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Phytozome | Prupe.5G087600.2.p |
Entrez Gene | 18775837 |