PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
|
Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
---|---|---|---|---|---|---|---|---|---|
TF ID | Prupe.5G045000.2.p | ||||||||
Common Name | PRUPE_ppa004161mg | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Maloideae; Amygdaleae; Prunus
|
||||||||
Family | ARR-B | ||||||||
Protein Properties | Length: 545aa MW: 60555.3 Da PI: 6.5994 | ||||||||
Description | ARR-B family protein | ||||||||
Gene Model |
|
Signature Domain? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | G2-like | 87 | 1.8e-27 | 308 | 362 | 1 | 56 |
G2-like 1 kprlrWtpeLHerFveaveqLGGsekAtPktilelmkvkgLtlehvkSHLQkYRla 56 k +++WtpeLH++Fv+aveqL G ++A+P++ilelmk +gLt+++v+SHLQkYR++ Prupe.5G045000.2.p 308 KMKVDWTPELHKKFVQAVEQL-GVDQAIPSRILELMKAEGLTRHNVASHLQKYRMH 362 5689*****************.********************************96 PP | |||||||
2 | Response_reg | 29 | 5.4e-11 | 20 | 126 | 1 | 109 |
EEEESSSHHHHHHHHHHHHHTTCEEEEEESSHHHHHHHHHHHH..ESEEEEESSCTTSEHHHHHHHHHHHTTTSEEEEEESTTTHHHHHHH CS Response_reg 1 vlivdDeplvrellrqalekegyeevaeaddgeealellkekd..pDlillDiempgmdGlellkeireeepklpiivvtahgeeedalea 89 vl+ d++++ + +++ le +y +v+++ + +eal + + +++ ++ ++ + +G+ +++ +++++ +lp i+ + +++ ++ Prupe.5G045000.2.p 20 VLLLDEDNSSAAEIKSKLEAMDY-IVTTFCNETEALSAFSSNPlsFQVAIVEVNAS--NGHGVFQFLETAK-DLPTIMTSNIHCLSTMMKC 106 7999999****************.***************88886699999887766..5666788888877.9*****999999******* PP HHTTESEEEESS--HHHHHH CS Response_reg 90 lkaGakdflsKpfdpeelvk 109 + +Ga +fl Kp ++++l++ Prupe.5G045000.2.p 107 IALGAVEFLRKPLSEDKLRN 126 *****************987 PP |
Protein Features ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Gene3D | G3DSA:3.40.50.2300 | 2.9E-16 | 16 | 163 | No hit | No description |
SuperFamily | SSF52172 | 9.11E-16 | 16 | 134 | IPR011006 | CheY-like superfamily |
SMART | SM00448 | 0.0056 | 18 | 128 | IPR001789 | Signal transduction response regulator, receiver domain |
PROSITE profile | PS50110 | 22.483 | 19 | 132 | IPR001789 | Signal transduction response regulator, receiver domain |
Pfam | PF00072 | 4.2E-8 | 20 | 127 | IPR001789 | Signal transduction response regulator, receiver domain |
CDD | cd00156 | 4.97E-9 | 21 | 131 | No hit | No description |
PROSITE profile | PS51294 | 15.081 | 305 | 364 | IPR017930 | Myb domain |
Gene3D | G3DSA:1.10.10.60 | 1.9E-26 | 306 | 364 | IPR009057 | Homeodomain-like |
SuperFamily | SSF46689 | 7.08E-18 | 307 | 365 | IPR009057 | Homeodomain-like |
TIGRFAMs | TIGR01557 | 1.3E-24 | 308 | 363 | IPR006447 | Myb domain, plants |
Pfam | PF00249 | 9.6E-9 | 311 | 360 | IPR001005 | SANT/Myb domain |
Gene Ontology ? help Back to Top | ||||||
---|---|---|---|---|---|---|
GO Term | GO Category | GO Description | ||||
GO:0000160 | Biological Process | phosphorelay signal transduction system | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
---|
Protein Sequence Length: 545 aa Download sequence Send to blast |
MVCTANDLQE WKDFPKGLKV LLLDEDNSSA AEIKSKLEAM DYIVTTFCNE TEALSAFSSN 60 PLSFQVAIVE VNASNGHGVF QFLETAKDLP TIMTSNIHCL STMMKCIALG AVEFLRKPLS 120 EDKLRNIWQH VVHKAFNAGG SAISESLKPV KESVVSILQI KQETEEQKCK ISVETENVSR 180 VHESDREQSV GSDKYPAPST PQLKQGSRLL ADGDCQDQIN CLSEKESGEN DSESKSVETT 240 CGNPIDEGTV QLSEPQMTRK RVVKEENDSV NGSQHPHNRN SANDVGGVAE NLSKASAPNN 300 SCKSNRKKMK VDWTPELHKK FVQAVEQLGV DQAIPSRILE LMKAEGLTRH NVASHLQKYR 360 MHKRHILPKE DDRRLPHPRD PIQRSYYPQN QKPIMAFPPY HYNNSLSMAP VYPMWGQPGS 420 QPAGVQMWGS PGYPQWQPSE SWHWKPYQGM QADAWGCPVM PPLQGGYPSY PQNAAGFHAG 480 VVDNSFDLHP AEEVVDKVVK EAISKPWLPL PLGLKPPSTE GVLDELSRQG ICNIPPHVNR 540 SNTR* |
3D Structure ? help Back to Top | ||||||
---|---|---|---|---|---|---|
PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
5lxu_A | 4e-16 | 313 | 362 | 6 | 55 | Transcription factor LUX |
Search in ModeBase |
Functional Description ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Source | Description | |||||
UniProt | Transcriptional activator that binds specifically to the DNA sequence 5'-[AG]GATT-3'. {ECO:0000250}. |
Cis-element ? help Back to Top | |
---|---|
Source | Link |
PlantRegMap | Prupe.5G045000.2.p |
Regulation -- PlantRegMap ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
Source | Hit ID | E-value | Description | ||||
Refseq | XP_020419555.1 | 0.0 | two-component response regulator-like APRR2 isoform X1 | ||||
Refseq | XP_020419556.1 | 0.0 | two-component response regulator-like APRR2 isoform X1 | ||||
Refseq | XP_020419557.1 | 0.0 | two-component response regulator-like APRR2 isoform X1 | ||||
Swissprot | Q6LA43 | 1e-149 | APRR2_ARATH; Two-component response regulator-like APRR2 | ||||
TrEMBL | A0A251P3J0 | 0.0 | A0A251P3J0_PRUPE; Uncharacterized protein | ||||
STRING | XP_008229552.1 | 0.0 | (Prunus mume) |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Hit ID | E-value | Description | ||||
AT4G18020.6 | 1e-146 | ARR-B family protein |
Link Out ? help Back to Top | |
---|---|
Phytozome | Prupe.5G045000.2.p |
Entrez Gene | 18775757 |
Publications ? help Back to Top | |||
---|---|---|---|
|