PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Prupe.4G267700.2.p

Common Name

PRUPE_ppa005223mg

Organism

Prunus persica

Taxonomic ID

3760

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Maloideae; Amygdaleae; Prunus

Family

HB-other

Protein Properties

Length: 462aa MW: 51973.5 Da PI: 7.8808

Description

HB-other family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Prupe.4G267700.2.p	genome	JGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	Homeobox	48.5	1.5e-15	2	45	14	57
HHHHHHHHSSS--HHHHHHHHHHCTS-HHHHHHHHHHHHHHHHC CS Homeobox 14 eLeelFeknrypsaeereeLAkklgLterqVkvWFqNrRakekk 57 +Le+++++++yp++e++ + A++lgL+e+q++ WF+ rR k+k+ Prupe.4G267700.2.p 2 ALEKFYNEHKYPTEEMKSQVAEQLGLSEKQISGWFCHRRLKDKR 45 7*****************************************97 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS50071	15.289	1	46	IPR001356	Homeobox domain
SMART	SM00389	1.2E-7	1	50	IPR001356	Homeobox domain
Pfam	PF00046	4.4E-13	2	45	IPR001356	Homeobox domain
SuperFamily	SSF46689	2.69E-13	2	54	IPR009057	Homeodomain-like
CDD	cd00086	6.49E-13	2	45	No hit	No description
Gene3D	G3DSA:1.10.10.60	6.0E-16	2	45	IPR009057	Homeodomain-like

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0005634	Cellular Component	nucleus
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 462 aa Download sequence Send to blast
MALEKFYNEH KYPTEEMKSQ VAEQLGLSEK QISGWFCHRR LKDKRLSRDE TCANGRQDRS 60 SGVIQDRASG LGQDSCGSTK HGDHRYVDPR EVESRRLSGH DFPAADITRE YRSHYTERVG 120 GMDNTSSESS SSLQDRFFTQ NDDPYDVETS RYLAHNGVFS PINSRATENM AYKPSGYLKV 180 KGEAENAAIT AVKRQLGRHY QEDGPPLGVE FDLLPPGAFE SPIMDSVHEP SIVGNPVLRS 240 PDISGVKGQL SPRTRYEVYN SKFSSQDSYI QQENPCIMHG FDLQEKKSSK KLRQKSTYLN 300 HTNSSPGKNS SLDIYDKSVG GTSAYNTNRK DKMRSKRGYS GRKVTSEQTE PCLHEYDRVS 360 SPKLVQRSDY LKPKPSSSIE ENLDGECKAM KVYSNPLRVM MNSTDEMVVA KQARVNLPQR 420 DYSTNSFPQL PPRKNQIKGT AMEMPSSFSE DETAETNSSV D*

Sequence ? help Back to Top

Protein Sequence Length: 462 aa Download sequence Send to blast

MALEKFYNEH KYPTEEMKSQ VAEQLGLSEK QISGWFCHRR LKDKRLSRDE TCANGRQDRS  60
SGVIQDRASG LGQDSCGSTK HGDHRYVDPR EVESRRLSGH DFPAADITRE YRSHYTERVG  120
GMDNTSSESS SSLQDRFFTQ NDDPYDVETS RYLAHNGVFS PINSRATENM AYKPSGYLKV  180
KGEAENAAIT AVKRQLGRHY QEDGPPLGVE FDLLPPGAFE SPIMDSVHEP SIVGNPVLRS  240
PDISGVKGQL SPRTRYEVYN SKFSSQDSYI QQENPCIMHG FDLQEKKSSK KLRQKSTYLN  300
HTNSSPGKNS SLDIYDKSVG GTSAYNTNRK DKMRSKRGYS GRKVTSEQTE PCLHEYDRVS  360
SPKLVQRSDY LKPKPSSSIE ENLDGECKAM KVYSNPLRVM MNSTDEMVVA KQARVNLPQR  420
DYSTNSFPQL PPRKNQIKGT AMEMPSSFSE DETAETNSSV D*

Cis-element ? help Back to Top
Source	Link
PlantRegMap	Prupe.4G267700.2.p

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_007213878.2	0.0	uncharacterized protein LOC18780090
TrEMBL	A0A251PSY1	0.0	A0A251PSY1_PRUPE; Uncharacterized protein
STRING	XP_008227678.1	0.0	(Prunus mume)

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT4G03250.1	6e-91	HB-other family protein

Link Out ? help Back to Top
Phytozome	Prupe.4G267700.2.p
Entrez Gene	18780090