PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Prupe.4G249900.1.p | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Maloideae; Amygdaleae; Prunus
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Family | NF-YA | ||||||||
Protein Properties | Length: 352aa MW: 38168.5 Da PI: 7.211 | ||||||||
Description | NF-YA family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | CBFB_NFYA | 102.6 | 3.6e-32 | 175 | 231 | 1 | 58 |
CBFB_NFYA 1 deplYVNaKQyqrIlkRRqkRakleeekkldeksrkpylheSRhkhAlrRpRgsgGrF 58 +ep+YVNaKQyq+Il+RRq+Rak+e e+kl +k rkpylheSRh+hA+rR+Rg+gGrF Prupe.4G249900.1.p 175 QEPVYVNAKQYQGILRRRQARAKAELERKL-IKVRKPYLHESRHQHAMRRARGTGGRF 231 69****************************.**************************9 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SMART | SM00521 | 1.9E-35 | 173 | 234 | IPR001289 | Nuclear transcription factor Y subunit A |
PROSITE profile | PS51152 | 37.201 | 174 | 234 | IPR001289 | Nuclear transcription factor Y subunit A |
Pfam | PF02045 | 9.2E-28 | 176 | 231 | IPR001289 | Nuclear transcription factor Y subunit A |
PRINTS | PR00616 | 3.9E-24 | 177 | 199 | IPR001289 | Nuclear transcription factor Y subunit A |
PROSITE pattern | PS00686 | 0 | 179 | 199 | IPR018362 | CCAAT-binding factor, conserved site |
PRINTS | PR00616 | 3.9E-24 | 208 | 231 | IPR001289 | Nuclear transcription factor Y subunit A |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0010262 | Biological Process | somatic embryogenesis | ||||
GO:0045892 | Biological Process | negative regulation of transcription, DNA-templated | ||||
GO:0048510 | Biological Process | regulation of timing of transition from vegetative to reproductive phase | ||||
GO:0055046 | Biological Process | microgametogenesis | ||||
GO:0016602 | Cellular Component | CCAAT-binding factor complex | ||||
GO:0003677 | Molecular Function | DNA binding | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 352 aa Download sequence Send to blast |
MQSKSETENR LHADHHTIPP NSVYSEPWWR GVGYNPISPA VTGRNASNSS SLECPNGGSE 60 SNDDRSLSND EPNEDDDDDA TKESQITSPR SAGNDGQERQ NMPHVGSTVP TVRDDCLAQP 120 PQLELVGHSI ACASNPYQDP YYAGMMAAYG HQPLGYPPFL GMPHARMPLP LEMAQEPVYV 180 NAKQYQGILR RRQARAKAEL ERKLIKVRKP YLHESRHQHA MRRARGTGGR FAKKTNGDKS 240 NSTGQEKGTG SGPAHSSQSG SSSGSEPFPS DSAETWNSSN SQQEGRGSQV HEAYPGHNYA 300 NGSGCFQTHG GLQASMYPSY SGKRGEEGDC TGQQRGSISS NQASQRRLAI Q* |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
4awl_A | 2e-18 | 175 | 231 | 2 | 58 | NUCLEAR TRANSCRIPTION FACTOR Y SUBUNIT ALPHA |
Search in ModeBase |
Expression -- Description ? help Back to Top | ||||||
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Source | Description | |||||
Uniprot | TISSUE SPECIFICITY: Ubiquitous. {ECO:0000269|PubMed:11250072, ECO:0000269|PubMed:9662544}. |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Stimulates the transcription of various genes by recognizing and binding to a CCAAT motif in promoters. {ECO:0000250}. |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Prupe.4G249900.1.p |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_020417617.1 | 0.0 | nuclear transcription factor Y subunit A-1 | ||||
Refseq | XP_020417618.1 | 0.0 | nuclear transcription factor Y subunit A-1 | ||||
Swissprot | Q9LXV5 | 6e-86 | NFYA1_ARATH; Nuclear transcription factor Y subunit A-1 | ||||
TrEMBL | A0A251PS20 | 0.0 | A0A251PS20_PRUPE; Uncharacterized protein | ||||
STRING | XP_008227314.1 | 0.0 | (Prunus mume) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Fabids | OGEF4012 | 34 | 61 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT5G12840.3 | 3e-82 | nuclear factor Y, subunit A1 |
Link Out ? help Back to Top | |
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Phytozome | Prupe.4G249900.1.p |
Publications ? help Back to Top | |||
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