PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Prupe.4G204800.1.p
Organism
Prunus persica
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Maloideae; Amygdaleae; Prunus
Family MYB
Protein Properties Length: 225aa    MW: 25696.9 Da    PI: 8.6183
Description MYB family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Prupe.4G204800.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding50.35.4e-161461148
                        TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS
     Myb_DNA-binding  1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48
                        rg+W + Ed+ l+d++k +G g W+ +a++ g++R++k+c++rw++yl
  Prupe.4G204800.1.p 14 RGAWCPKEDKVLADYIKTHGEGKWSHVAKKTGLNRSGKSCRLRWLNYL 61
                        89********************************************97 PP
2Myb_DNA-binding52.89.1e-1767109145
                         TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHH CS
     Myb_DNA-binding   1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwq 45 
                         rg++++eE++l+++ +k+lG++ W++Ia +++ gRt++++k++w+
  Prupe.4G204800.1.p  67 RGNFSPEEEDLIIRMHKLLGNR-WSLIAGRLP-GRTDNEIKNFWN 109
                         89********************.*********.***********8 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5129415.956961IPR017930Myb domain
SMARTSM007172.0E-121363IPR001005SANT/Myb domain
SuperFamilySSF466893.01E-2913108IPR009057Homeodomain-like
PfamPF002499.4E-151461IPR001005SANT/Myb domain
Gene3DG3DSA:1.10.10.601.6E-231568IPR009057Homeodomain-like
CDDcd001672.44E-91661No hitNo description
PROSITE profilePS5129424.77562116IPR017930Myb domain
SMARTSM007177.1E-1666114IPR001005SANT/Myb domain
PfamPF002493.0E-1567109IPR001005SANT/Myb domain
CDDcd001679.21E-1269112No hitNo description
Gene3DG3DSA:1.10.10.602.0E-2469115IPR009057Homeodomain-like
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 225 aa     Download sequence    Send to blast
MGRKLPGDKD VVKRGAWCPK EDKVLADYIK THGEGKWSHV AKKTGLNRSG KSCRLRWLNY  60
LRPDVKRGNF SPEEEDLIIR MHKLLGNRWS LIAGRLPGRT DNEIKNFWNI NLSKRVPEAR  120
PRRIKINAKN DGADEGGNCT AKDDQVQVIQ SITLNCTKAA AMIPSHHHLH DGDQRVNIQE  180
QRVVDDISSS SFLRDLDNFI NDVLHESEIN GDQYYVVDDQ EREY*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1a5j_A7e-2671161108B-MYB
Search in ModeBase
Cis-element ? help Back to Top
SourceLink
PlantRegMapPrupe.4G204800.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankKT8934080.0KT893408.1 Prunus persica cultivar Xiaobaitao r2r3-myb transcription factor mRNA, partial cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_007212535.21e-167transcription factor TT2 isoform X1
TrEMBLA0A251PNJ91e-165A0A251PNJ9_PRUPE; Uncharacterized protein
STRINGXP_008244405.11e-153(Prunus mume)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF1785547
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G35550.12e-56MYB family protein