PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Prupe.4G132100.1.p
Common NamePRUPE_ppa004256mg
Organism
Prunus persica
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Maloideae; Amygdaleae; Prunus
Family GRAS
Protein Properties Length: 533aa    MW: 59633.6 Da    PI: 4.6079
Description GRAS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Prupe.4G132100.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1GRAS364.21.8e-1111545241373
                GRAS   1 lvelLlecAeavssgdlelaqalLarlselaspdgdpmqRlaayfteALaarlar.svselykalppsetsekn..sseelaalklfsevs 88 
                         lv+ Ll+cAeav  +d++la++lL+++   +sp gd++qR+ ++f+ +L++rl+  +  ++  +++  + + +    +e+l a++l+++++
  Prupe.4G132100.1.p 154 LVHMLLACAEAVGCRDTKLAESLLSQIWASVSPWGDSLQRVSSCFAMGLRSRLSLlHNVNINGTFNNDTMDVSLtsREEKLEAFQLLNQTT 244
                         689**************************************************9956666777776666554446689999********** PP

                GRAS  89 PilkfshltaNqaIleavegeervHiiDfdisqGlQWpaLlqaLasRpegpp.slRiTgvgspesgskeeleetgerLakfAeelgvpfef 178
                         P++ f++++aN+aI +a++g+e +HiiD+++++ lQWp+L+++LasRpegpp +lRiTg+++   ++  ele+  + L + A++lg+p ef
  Prupe.4G132100.1.p 245 PYIAFGFMVANEAICQAAQGKENLHIIDLGMEHTLQWPSLIRTLASRPEGPPkKLRITGLVE--DHNVFELEAGMKALVEEASSLGIPTEF 333
                         ************************************************988889********..569************************ PP

                GRAS 179 nvlvak.rledleleeLrvkpgEalaVnlvlqlhrlldesvsleserdevLklvkslsPkvvvvveqeadhnsesFlerflealeyysalf 268
                         n++ +  + + l+ e+L++++gEal Vn++++lh+ ++es  + +   ++L+++k+l P+v+++veq+a+hn++ Fl rfle+l++ysa+f
  Prupe.4G132100.1.p 334 NMISEPvKPSLLTRENLDLREGEALFVNSIMHLHKYVKESRGSLK---AILQALKKLGPTVLTLVEQDANHNGPFFLGRFLESLHFYSAIF 421
                         **744358999**************************88776666...9****************************************** PP

                GRAS 269 dsleaklpreseerikvErellgreivnvvacegaerrerhetlekWrerleeaGFkpvplsekaakqaklllrkvksdgyrveeesgslv 359
                         dsl+a+lpr+s +r+k+Er+ ++ ei+n+va eg +r+erhe++ +Wr++l++aGF+ + l+   ++qa+++l+ ++ dgy++ +e+g+l+
  Prupe.4G132100.1.p 422 DSLDASLPRNSPQRMKIERQHFADEIRNIVAFEGLNRIERHERADQWRRQLGRAGFQVMGLK--CTSQARMMLSVYGCDGYTLASEKGCLL 510
                         **********************************************************9996..679************************ PP

                GRAS 360 lgWkdrpLvsvSaW 373
                         lgWk+rp++ +SaW
  Prupe.4G132100.1.p 511 LGWKGRPIMLASAW 524
                         ************** PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5098554.512128507IPR005202Transcription factor GRAS
PfamPF035146.1E-109154524IPR005202Transcription factor GRAS
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
Sequence ? help Back to Top
Protein Sequence    Length: 533 aa     Download sequence    Send to blast
MEDFNGWLSF PFHESLNHDL AIRKVLSTRV QQEQGGEWEE ILNEIEFSSP SETTSPPCLP  60
ASEVDDFVDS FINMDHCGDD DIQSLEKQQS FDYYDQDGME TFSMVDDMYG DVLMMMEGDD  120
MEMGGLAEDF GVGETNMVPS VEEVSHGVDQ GLHLVHMLLA CAEAVGCRDT KLAESLLSQI  180
WASVSPWGDS LQRVSSCFAM GLRSRLSLLH NVNINGTFNN DTMDVSLTSR EEKLEAFQLL  240
NQTTPYIAFG FMVANEAICQ AAQGKENLHI IDLGMEHTLQ WPSLIRTLAS RPEGPPKKLR  300
ITGLVEDHNV FELEAGMKAL VEEASSLGIP TEFNMISEPV KPSLLTRENL DLREGEALFV  360
NSIMHLHKYV KESRGSLKAI LQALKKLGPT VLTLVEQDAN HNGPFFLGRF LESLHFYSAI  420
FDSLDASLPR NSPQRMKIER QHFADEIRNI VAFEGLNRIE RHERADQWRR QLGRAGFQVM  480
GLKCTSQARM MLSVYGCDGY TLASEKGCLL LGWKGRPIML ASAWHVHNAS SS*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5b3h_A3e-6516152425377Protein SCARECROW
5b3h_D3e-6516152425377Protein SCARECROW
Search in ModeBase
Cis-element ? help Back to Top
SourceLink
PlantRegMapPrupe.4G132100.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_008226143.10.0PREDICTED: DELLA protein RGL1-like
TrEMBLA0A251PJY80.0A0A251PJY8_PRUPE; Uncharacterized protein
STRINGEMJ130190.0(Prunus persica)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF132512730
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G66350.11e-79RGA-like 1