PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Prupe.4G107000.1.p

Common Name

PRUPE_ppa021227mg

Organism

Prunus persica

Taxonomic ID

3760

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Maloideae; Amygdaleae; Prunus

Family

Trihelix

Protein Properties

Length: 350aa MW: 38594.3 Da PI: 8.8464

Description

Trihelix family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Prupe.4G107000.1.p	genome	JGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	trihelix	51.8	2.2e-16	22	112	2	79
trihelix 2 WtkqevlaLiearremeerlrrgk............lkkplWeevskkmrergferspkqCkekwenlnkrykkikegekkr.tsessstc 79 Wt e++ Liea++ ++er +++ ++ +W++v ++++++g+ rs++qC++kw+nl ++ykk++e e+++ ++e+ s + Prupe.4G107000.1.p 22 WTVGETMILIEAKKMDDERRMKRSgdaagsetrsskPAELRWKWVEDYCWKKGCLRSQNQCNDKWDNLMRDYKKVREYERREgREEAASYW 112 ***********96655555432234444445444999**************************************996344444444 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS50090	6.69	14	90	IPR017877	Myb-like domain
Pfam	PF13837	3.3E-13	21	115	No hit	No description

Sequence ? help Back to Top
Protein Sequence Length: 350 aa Download sequence Send to blast
MADQGGNGTS SVIMRDYRKG NWTVGETMIL IEAKKMDDER RMKRSGDAAG SETRSSKPAE 60 LRWKWVEDYC WKKGCLRSQN QCNDKWDNLM RDYKKVREYE RREGREEAAS YWKLEKSERK 120 DRNLPTNMVP QIYEALVDVV EKREAGHHQI RVVGGASVSG SNVPNPTIGY VVERPIISTS 180 VHQASLPPPV LQHHISVPPI AALPLLPPAP LAAQPPPTLP YSQPMPTVDS ETSHEHSDSP 240 AKRRRRASGG GGGGGDQGTS GTVSASTSSE VGTAISRGAS MIAEALQGCE EREERRHRDL 300 LSLHERRLQI EETKTEINRQ GINGLIDAIN KLADSIHALA SNKNQSPPK*

Sequence ? help Back to Top

Protein Sequence Length: 350 aa Download sequence Send to blast

MADQGGNGTS SVIMRDYRKG NWTVGETMIL IEAKKMDDER RMKRSGDAAG SETRSSKPAE  60
LRWKWVEDYC WKKGCLRSQN QCNDKWDNLM RDYKKVREYE RREGREEAAS YWKLEKSERK  120
DRNLPTNMVP QIYEALVDVV EKREAGHHQI RVVGGASVSG SNVPNPTIGY VVERPIISTS  180
VHQASLPPPV LQHHISVPPI AALPLLPPAP LAAQPPPTLP YSQPMPTVDS ETSHEHSDSP  240
AKRRRRASGG GGGGGDQGTS GTVSASTSSE VGTAISRGAS MIAEALQGCE EREERRHRDL  300
LSLHERRLQI EETKTEINRQ GINGLIDAIN KLADSIHALA SNKNQSPPK*

Cis-element ? help Back to Top
Source	Link
PlantRegMap	Prupe.4G107000.1.p

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_007213081.1	0.0	uncharacterized protein LOC18778848 isoform X2
TrEMBL	M5X5C2	0.0	M5X5C2_PRUPE; Uncharacterized protein
STRING	EMJ14280	0.0	(Prunus persica)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Fabids	OGEF6804	32	42

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT2G35640.1	4e-60	Trihelix family protein

Link Out ? help Back to Top
Phytozome	Prupe.4G107000.1.p
Entrez Gene	18778848