PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Prupe.4G068100.3.p
Common NamePRUPE_ppa006534mg
Organism
Prunus persica
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Maloideae; Amygdaleae; Prunus
Family HSF
Protein Properties Length: 408aa    MW: 46118.3 Da    PI: 5.0481
Description HSF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Prupe.4G068100.3.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HSF_DNA-bind110.51.2e-34141052102
                         HHHHHHHHHCTGGGTTTSEESSSSSEEEES-HHHHHHHTHHHHSTT--HHHHHHHHHHTTEEE---SSBTTTTXTTSEEEEESXXXXXXXX CS
        HSF_DNA-bind   2 FlkklyeiledeelkeliswsengnsfvvldeeefakkvLpkyFkhsnfaSFvRQLnmYgFkkvkdeekkskskekiweFkhksFkkgkke 92 
                         Fl+k+y++++d+++++++sws++++sf+v+++ efa+++Lpk+Fkh+nf+SF+RQLn+YgF+k++ e+         weF+++ F +g+ +
  Prupe.4G068100.3.p  14 FLSKTYDMVDDASTDSIVSWSASNKSFIVWNPPEFARDLLPKFFKHNNFSSFIRQLNTYGFRKIDPEQ---------WEFANDDFIRGQPH 95 
                         9********************999****************************************9998.........************** PP

                         XXXXXXXXXX CS
        HSF_DNA-bind  93 llekikrkks 102
                         l+++i+r+k 
  Prupe.4G068100.3.p  96 LMKNIHRRKP 105
                         *******985 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF467853.26E-359103IPR011991Winged helix-turn-helix DNA-binding domain
SMARTSM004151.4E-6310103IPR000232Heat shock factor (HSF)-type, DNA-binding
Gene3DG3DSA:1.10.10.104.5E-3811103IPR011991Winged helix-turn-helix DNA-binding domain
PfamPF004474.5E-3114103IPR000232Heat shock factor (HSF)-type, DNA-binding
PRINTSPR000561.2E-191437IPR000232Heat shock factor (HSF)-type, DNA-binding
PRINTSPR000561.2E-195264IPR000232Heat shock factor (HSF)-type, DNA-binding
PROSITE patternPS0043405377IPR000232Heat shock factor (HSF)-type, DNA-binding
PRINTSPR000561.2E-196577IPR000232Heat shock factor (HSF)-type, DNA-binding
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0000302Biological Processresponse to reactive oxygen species
GO:0010200Biological Processresponse to chitin
GO:0045893Biological Processpositive regulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0042803Molecular Functionprotein homodimerization activity
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 408 aa     Download sequence    Send to blast
MDEVQGGASS LPPFLSKTYD MVDDASTDSI VSWSASNKSF IVWNPPEFAR DLLPKFFKHN  60
NFSSFIRQLN TYGFRKIDPE QWEFANDDFI RGQPHLMKNI HRRKPVHSHS LQNLQVQGNG  120
TSLSESERQS MKDEIERLKH EKERLGVELQ RHEQERQGLE LQIQFLKERL QHMERQQQTM  180
AGFVARVLQK PGIASNPVPQ LEIHGRKRRL PRIGWSYDEA SNGNNQVASS QAGIRENADM  240
EKLEQLESFL TFWEDTIFDV GETHIQVVSN VELDESTSCV ESAVISSIQL NVDAQPKSPG  300
IDMNSEPDVV VAPEPAAAVP PEPTSSKEQT SGITASAPTG VNDVFWEHFL TENPGSVEAQ  360
EVQLEKRDSD GRKNESKPAD HGKLWWNMRN VNNLTEQMGH LTPVEKT*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
2ldu_A3e-25610312120Heat shock factor protein 1
5d5u_B4e-25710322129Heat shock factor protein 1
5d5v_B4e-25710322129Heat shock factor protein 1
5d5v_D4e-25710322129Heat shock factor protein 1
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtTranscriptional activator that specifically binds DNA sequence 5'-AGAAnnTTCT-3' known as heat shock promoter elements (HSE).
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00443DAPTransfer from AT4G18880Download
Motif logo
Cis-element ? help Back to Top
SourceLink
PlantRegMapPrupe.4G068100.3.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_020417594.10.0heat stress transcription factor A-4c
SwissprotO494031e-130HFA4A_ARATH; Heat stress transcription factor A-4a
TrEMBLM5WMW70.0M5WMW7_PRUPE; Uncharacterized protein
STRINGEMJ150390.0(Prunus persica)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G18880.11e-130heat shock transcription factor A4A
Publications ? help Back to Top
  1. Ding Y, et al.
    Four distinct types of dehydration stress memory genes in Arabidopsis thaliana.
    BMC Plant Biol., 2013. 13: p. 229
    [PMID:24377444]