PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Prupe.4G051000.5.p | ||||||||
Common Name | PRUPE_ppa002526mg | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Maloideae; Amygdaleae; Prunus
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Family | C3H | ||||||||
Protein Properties | Length: 596aa MW: 65649.8 Da PI: 7.8026 | ||||||||
Description | C3H family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | zf-CCCH | 24.9 | 3.5e-08 | 17 | 36 | 5 | 25 |
--SGGGGTS--TTTTT-SS-S CS zf-CCCH 5 lCrffartGtCkyGdrCkFaH 25 +C+ffa+ G+C +G +CkF H Prupe.4G051000.5.p 17 ICDFFAK-GWCIRGTSCKFVH 36 6******.************* PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SMART | SM00356 | 0.0092 | 12 | 38 | IPR000571 | Zinc finger, CCCH-type |
PROSITE profile | PS50103 | 14.23 | 12 | 39 | IPR000571 | Zinc finger, CCCH-type |
SuperFamily | SSF90229 | 4.32E-6 | 12 | 36 | IPR000571 | Zinc finger, CCCH-type |
Pfam | PF00642 | 9.4E-6 | 17 | 36 | IPR000571 | Zinc finger, CCCH-type |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0010220 | Biological Process | positive regulation of vernalization response | ||||
GO:0046872 | Molecular Function | metal ion binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 596 aa Download sequence Send to blast |
MSPVAETSDR NKRPAIICDF FAKGWCIRGT SCKFVHIKDN LNSTHPQGDV AAANCTREVQ 60 PDEGLRDITE RSRSPGFPDP LASSHLSSEK IRFSEHKGIQ RRHQSLENHK FPAVPGEESN 120 MGESTDAHKL HSSKDDQVFL SSFKDVGRDG HARNWPVDGY NNSPIHKDNS RFMSGLHPEP 180 GFFSNGSTAS SGKYSRGNPT SQSSCMDEPA GIWSQRMHSD HNSPLVSLSL NSNSSNLLTN 240 GSFPASRISS WTGFSLPSSY SCLDASPHGT QKLLDRNRDY HYSTRSSPLL KSSSPFSSSE 300 LKKLPSTSVS LRSDKLKTKI SSNDWEPSVP FQPSFILPPA FLSSSGSQYD PLRDSIDLPK 360 LANISFEASF YSEEAAIGNK LHHQILGESV SGTMRPVCDG DTNSMSSHNT CHEKVLDNSC 420 YTREHNSPVT EAETVGASVV CQNGTMAIEE NLSGPSHLKG STKPHKTSSY GDSRPQSDSS 480 RHKKDITVDR FRENNEVDGE HVTDGDVQQE SKALRHFRAA LVELVKELLK PKWREGCLSK 540 DAHNKIVKKA VEKVLSAFQP QQIPPTVETV LQYLSSCRPK ISKLVEGYVE KYGKS* |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Prupe.4G051000.5.p |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_007211370.2 | 0.0 | protein FRIGIDA-ESSENTIAL 1 isoform X1 | ||||
TrEMBL | A0A251PFZ0 | 0.0 | A0A251PFZ0_PRUPE; Uncharacterized protein | ||||
STRING | EMJ12569 | 0.0 | (Prunus persica) |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT2G33835.1 | 1e-36 | C3H family protein |
Link Out ? help Back to Top | |
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Phytozome | Prupe.4G051000.5.p |
Entrez Gene | 18781074 |