PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Prupe.4G051000.3.p | ||||||||
Common Name | PRUPE_ppa002526mg | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Maloideae; Amygdaleae; Prunus
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Family | C3H | ||||||||
Protein Properties | Length: 526aa MW: 58005.7 Da PI: 8.0576 | ||||||||
Description | C3H family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | zf-CCCH | 25.1 | 3e-08 | 17 | 36 | 5 | 25 |
--SGGGGTS--TTTTT-SS-S CS zf-CCCH 5 lCrffartGtCkyGdrCkFaH 25 +C+ffa+ G+C +G +CkF H Prupe.4G051000.3.p 17 ICDFFAK-GWCIRGTSCKFVH 36 6******.************* PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SuperFamily | SSF90229 | 3.66E-6 | 12 | 36 | IPR000571 | Zinc finger, CCCH-type |
SMART | SM00356 | 0.0092 | 12 | 38 | IPR000571 | Zinc finger, CCCH-type |
PROSITE profile | PS50103 | 14.23 | 12 | 39 | IPR000571 | Zinc finger, CCCH-type |
Pfam | PF00642 | 8.1E-6 | 17 | 36 | IPR000571 | Zinc finger, CCCH-type |
Gene3D | G3DSA:4.10.1000.10 | 0.001 | 17 | 40 | IPR000571 | Zinc finger, CCCH-type |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0010220 | Biological Process | positive regulation of vernalization response | ||||
GO:0046872 | Molecular Function | metal ion binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 526 aa Download sequence Send to blast |
MSPVAETSDR NKRPAIICDF FAKGWCIRGT SCKFVHIKDN LNSTHPQGDV AAANCTREVQ 60 PDEGLRDITE RSRSPGFPDP LASSHLSSEK IRFSEHKGIQ RRHQSLENHK FPAVPGEESN 120 MGKYSRGNPT SQSSCMDEPA GIWSQRMHSD HNSPLVSLSL NSNSSNLLTN GSFPASRISS 180 WTGFSLPSSY SCLDASPHGT QKLLDRNRDY HYSTRSSPLL KSSSPFSSSE LKKLPSTSVS 240 LRSDKLKTKI SSNDWEPSVP FQPSFILPPA FLSSSGSQYD PLRDSIDLPK LANISFEASF 300 YSEEAAIGNK LHHQILGESV SGTMRPVCDG DTNSMSSHNT CHEKVLDNSC YTREHNSPVT 360 EAETVGASVV CQNGTMAIEE NLSGPSHLKG STKPHKTSSY GDSRPQSDSS RHKKDITVDR 420 FRENNEVDGE HVTDGDVQQE SKALRHFRAA LVELVKELLK PKWREGCLSK DAHNKIVKKA 480 VEKVLSAFQP QQIPPTVETV LQYLSSCRPK ISKLVEGYVE KYGKS* |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Prupe.4G051000.3.p |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_020417567.1 | 0.0 | protein FRIGIDA-ESSENTIAL 1 isoform X2 | ||||
TrEMBL | A0A251PG18 | 0.0 | A0A251PG18_PRUPE; Uncharacterized protein | ||||
STRING | EMJ12569 | 0.0 | (Prunus persica) |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT2G33835.1 | 6e-37 | C3H family protein |
Link Out ? help Back to Top | |
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Phytozome | Prupe.4G051000.3.p |
Entrez Gene | 18781074 |