PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Prupe.4G051000.12.p | ||||||||
Common Name | PRUPE_ppa002526mg | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Maloideae; Amygdaleae; Prunus
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Family | C3H | ||||||||
Protein Properties | Length: 663aa MW: 73003.1 Da PI: 7.6782 | ||||||||
Description | C3H family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | zf-CCCH | 24.7 | 4e-08 | 84 | 103 | 5 | 25 |
--SGGGGTS--TTTTT-SS-S CS zf-CCCH 5 lCrffartGtCkyGdrCkFaH 25 +C+ffa+ G+C +G +CkF H Prupe.4G051000.12.p 84 ICDFFAK-GWCIRGTSCKFVH 103 6******.************* PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SuperFamily | SSF90229 | 4.84E-6 | 79 | 103 | IPR000571 | Zinc finger, CCCH-type |
SMART | SM00356 | 0.0092 | 79 | 105 | IPR000571 | Zinc finger, CCCH-type |
PROSITE profile | PS50103 | 14.23 | 79 | 106 | IPR000571 | Zinc finger, CCCH-type |
Pfam | PF00642 | 1.1E-5 | 84 | 103 | IPR000571 | Zinc finger, CCCH-type |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0010220 | Biological Process | positive regulation of vernalization response | ||||
GO:0046872 | Molecular Function | metal ion binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 663 aa Download sequence Send to blast |
MDAKASNSSG VAGEEMADAI LMRDHLGKEV KSVMNPEDVM KQGDIHPRND RKQMDSRSAA 60 SEKVTRIMSP VAETSDRNKR PAIICDFFAK GWCIRGTSCK FVHIKDNLNS THPQGDVAAA 120 NCTREVQPDE GLRDITERSR SPGFPDPLAS SHLSSEKIRF SEHKGIQRRH QSLENHKFPA 180 VPGEESNMGE STDAHKLHSS KDDQVFLSSF KDVGRDGHAR NWPVDGYNNS PIHKDNSRFM 240 SGLHPEPGFF SNGSTASSGK YSRGNPTSQS SCMDEPAGIW SQRMHSDHNS PLVSLSLNSN 300 SSNLLTNGSF PASRISSWTG FSLPSSYSCL DASPHGTQKL LDRNRDYHYS TRSSPLLKSS 360 SPFSSSELKK LPSTSVSLRS DKLKTKISSN DWEPSVPFQP SFILPPAFLS SSGSQYDPLR 420 DSIDLPKLAN ISFEASFYSE EAAIGNKLHH QILGESVSGT MRPVCDGDTN SMSSHNTCHE 480 KVLDNSCYTR EHNSPVTEAE TVGASVVCQN GTMAIEENLS GPSHLKGSTK PHKTSSYGDS 540 RPQSDSSRHK KDITVDRFRE NNEVDGEHVT DGDVQQESKA LRHFRAALVE LVKELLKPKW 600 REGCLSKDAH NKIVKKAVEK VLSAFQPQQI PPTVETVLQY LSSCRPKISK LVEGYVEKYG 660 KS* |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Prupe.4G051000.12.p |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_007211370.2 | 0.0 | protein FRIGIDA-ESSENTIAL 1 isoform X1 | ||||
TrEMBL | A0A251PFZ0 | 0.0 | A0A251PFZ0_PRUPE; Uncharacterized protein | ||||
STRING | EMJ12569 | 0.0 | (Prunus persica) |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT2G33835.1 | 4e-36 | C3H family protein |
Link Out ? help Back to Top | |
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Phytozome | Prupe.4G051000.12.p |
Entrez Gene | 18781074 |