PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Prupe.4G051000.10.p
Common NamePRUPE_ppa002526mg
Organism
Prunus persica
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Maloideae; Amygdaleae; Prunus
Family C3H
Protein Properties Length: 663aa    MW: 73003.1 Da    PI: 7.6782
Description C3H family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Prupe.4G051000.10.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-CCCH24.74e-0884103525
                          --SGGGGTS--TTTTT-SS-S CS
              zf-CCCH   5 lCrffartGtCkyGdrCkFaH 25 
                          +C+ffa+ G+C +G +CkF H
  Prupe.4G051000.10.p  84 ICDFFAK-GWCIRGTSCKFVH 103
                          6******.************* PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF902294.84E-679103IPR000571Zinc finger, CCCH-type
SMARTSM003560.009279105IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010314.2379106IPR000571Zinc finger, CCCH-type
PfamPF006421.1E-584103IPR000571Zinc finger, CCCH-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0010220Biological Processpositive regulation of vernalization response
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 663 aa     Download sequence    Send to blast
MDAKASNSSG VAGEEMADAI LMRDHLGKEV KSVMNPEDVM KQGDIHPRND RKQMDSRSAA  60
SEKVTRIMSP VAETSDRNKR PAIICDFFAK GWCIRGTSCK FVHIKDNLNS THPQGDVAAA  120
NCTREVQPDE GLRDITERSR SPGFPDPLAS SHLSSEKIRF SEHKGIQRRH QSLENHKFPA  180
VPGEESNMGE STDAHKLHSS KDDQVFLSSF KDVGRDGHAR NWPVDGYNNS PIHKDNSRFM  240
SGLHPEPGFF SNGSTASSGK YSRGNPTSQS SCMDEPAGIW SQRMHSDHNS PLVSLSLNSN  300
SSNLLTNGSF PASRISSWTG FSLPSSYSCL DASPHGTQKL LDRNRDYHYS TRSSPLLKSS  360
SPFSSSELKK LPSTSVSLRS DKLKTKISSN DWEPSVPFQP SFILPPAFLS SSGSQYDPLR  420
DSIDLPKLAN ISFEASFYSE EAAIGNKLHH QILGESVSGT MRPVCDGDTN SMSSHNTCHE  480
KVLDNSCYTR EHNSPVTEAE TVGASVVCQN GTMAIEENLS GPSHLKGSTK PHKTSSYGDS  540
RPQSDSSRHK KDITVDRFRE NNEVDGEHVT DGDVQQESKA LRHFRAALVE LVKELLKPKW  600
REGCLSKDAH NKIVKKAVEK VLSAFQPQQI PPTVETVLQY LSSCRPKISK LVEGYVEKYG  660
KS*
Cis-element ? help Back to Top
SourceLink
PlantRegMapPrupe.4G051000.10.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_007211370.20.0protein FRIGIDA-ESSENTIAL 1 isoform X1
TrEMBLA0A251PFZ00.0A0A251PFZ0_PRUPE; Uncharacterized protein
STRINGEMJ125690.0(Prunus persica)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G33835.14e-36C3H family protein