PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Prupe.4G051000.1.p | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Maloideae; Amygdaleae; Prunus
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Family | C3H | ||||||||
Protein Properties | Length: 797aa MW: 88685.9 Da PI: 4.6431 | ||||||||
Description | C3H family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | zf-CCCH | 24.5 | 4.9e-08 | 218 | 237 | 5 | 25 |
--SGGGGTS--TTTTT-SS-S CS zf-CCCH 5 lCrffartGtCkyGdrCkFaH 25 +C+ffa+ G+C +G +CkF H Prupe.4G051000.1.p 218 ICDFFAK-GWCIRGTSCKFVH 237 6******.************* PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS50103 | 14.23 | 213 | 240 | IPR000571 | Zinc finger, CCCH-type |
SMART | SM00356 | 0.0092 | 213 | 239 | IPR000571 | Zinc finger, CCCH-type |
SuperFamily | SSF90229 | 7.38E-6 | 213 | 237 | IPR000571 | Zinc finger, CCCH-type |
Pfam | PF00642 | 1.3E-5 | 218 | 237 | IPR000571 | Zinc finger, CCCH-type |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0010220 | Biological Process | positive regulation of vernalization response | ||||
GO:0046872 | Molecular Function | metal ion binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 797 aa Download sequence Send to blast |
MPRDDQSPLP GEVSDSADIE EEEEEDPEIE EEEEEDDDDE EDPEIVEEEE EEEEGEEEEE 60 EEEEEEEEEE VEGEQEEIME EERIEVDMDI SDSPVQARDH HNDVRQDYKP EGLDGIHSNE 120 SHDDGKAYLR HSVVMDAKAS NSSGVAGEEM ADAILMRDHL GKEVKSVMNP EDVMKQGDIH 180 PRNDRKQMDS RSAASEKVTR IMSPVAETSD RNKRPAIICD FFAKGWCIRG TSCKFVHIKD 240 NLNSTHPQGD VAAANCTREV QPDEGLRDIT ERSRSPGFPD PLASSHLSSE KIRFSEHKGI 300 QRRHQSLENH KFPAVPGEES NMGESTDAHK LHSSKDDQVF LSSFKDVGRD GHARNWPVDG 360 YNNSPIHKDN SRFMSGLHPE PGFFSNGSTA SSGKYSRGNP TSQSSCMDEP AGIWSQRMHS 420 DHNSPLVSLS LNSNSSNLLT NGSFPASRIS SWTGFSLPSS YSCLDASPHG TQKLLDRNRD 480 YHYSTRSSPL LKSSSPFSSS ELKKLPSTSV SLRSDKLKTK ISSNDWEPSV PFQPSFILPP 540 AFLSSSGSQY DPLRDSIDLP KLANISFEAS FYSEEAAIGN KLHHQILGES VSGTMRPVCD 600 GDTNSMSSHN TCHEKVLDNS CYTREHNSPV TEAETVGASV VCQNGTMAIE ENLSGPSHLK 660 GSTKPHKTSS YGDSRPQSDS SRHKKDITVD RFRENNEVDG EHVTDGDVQQ ESKALRHFRA 720 ALVELVKELL KPKWREGCLS KDAHNKIVKK AVEKVLSAFQ PQQIPPTVET VLQYLSSCRP 780 KISKLVEGYV EKYGKS* |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Prupe.4G051000.1.p |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_007211370.2 | 0.0 | protein FRIGIDA-ESSENTIAL 1 isoform X1 | ||||
TrEMBL | A0A251PFZ0 | 0.0 | A0A251PFZ0_PRUPE; Uncharacterized protein | ||||
STRING | XP_008225128.1 | 0.0 | (Prunus mume) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Fabids | OGEF10805 | 27 | 33 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT2G33835.1 | 1e-35 | C3H family protein |
Link Out ? help Back to Top | |
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Phytozome | Prupe.4G051000.1.p |