PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Prupe.4G050300.1.p | ||||||||
Common Name | PRUPE_ppa007258mg | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Maloideae; Amygdaleae; Prunus
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Family | Dof | ||||||||
Protein Properties | Length: 377aa MW: 40988.8 Da PI: 8.026 | ||||||||
Description | Dof family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | zf-Dof | 125.6 | 1.6e-39 | 66 | 126 | 2 | 62 |
zf-Dof 2 kekalkcprCdstntkfCyynnyslsqPryfCkaCrryWtkGGalrnvPvGggrrknkkss 62 +++alkcprCds+ntkfCyynnyslsqPr+fCkaC+ryWt+GG+lrnvPvGgg+rknk+++ Prupe.4G050300.1.p 66 QQQALKCPRCDSSNTKFCYYNNYSLSQPRHFCKACKRYWTRGGTLRNVPVGGGCRKNKRVK 126 57899*****************************************************976 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Pfam | PF02701 | 1.1E-33 | 68 | 124 | IPR003851 | Zinc finger, Dof-type |
PROSITE profile | PS50884 | 29.525 | 70 | 124 | IPR003851 | Zinc finger, Dof-type |
ProDom | PD007478 | 2.0E-26 | 71 | 124 | IPR003851 | Zinc finger, Dof-type |
PROSITE pattern | PS01361 | 0 | 72 | 108 | IPR003851 | Zinc finger, Dof-type |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 377 aa Download sequence Send to blast |
MLSNCDHEKM VLISSTTNEW PQMQQQDNIQ IDDHHQKGLN NNMSSSTSSP ATRIMEKPGQ 60 EQLQLQQQAL KCPRCDSSNT KFCYYNNYSL SQPRHFCKAC KRYWTRGGTL RNVPVGGGCR 120 KNKRVKRPGS SSSSAMDGAS SSSSSIPSNT ANNNNSNSNP PSQPSQIDQI NPMFYGLPSN 180 PFMDSPSSAS GFDLHQLNHH HAQLGLGFSS AGTFMSGDNY RNRFNPTSNS SLPSSNYSSI 240 FSTSPSTTTT TPTMASVLAS KFLNGGSFKD IQARGPNHNQ YFQSLLPFED LHIAAGNTGE 300 AGGAAKDVKV EDQAGQNRLE WNNNSNNNNV NGNMNCQNQM TEQMGLSDPS LYWSSTTLGA 360 NWHDPSNLGS SVSSLI* |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Prupe.4G050300.1.p |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_007211446.1 | 0.0 | dof zinc finger protein DOF1.4 | ||||
TrEMBL | M5X0R0 | 0.0 | M5X0R0_PRUPE; Uncharacterized protein | ||||
STRING | EMJ12645 | 0.0 | (Prunus persica) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Fabids | OGEF4522 | 33 | 56 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G28310.2 | 2e-34 | Dof family protein |
Link Out ? help Back to Top | |
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Phytozome | Prupe.4G050300.1.p |
Entrez Gene | 18779396 |