PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
|
Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
---|---|---|---|---|---|---|---|---|---|
TF ID | Prupe.4G039700.1.p | ||||||||
Common Name | PRUPE_ppa005047mg | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Maloideae; Amygdaleae; Prunus
|
||||||||
Family | MYB_related | ||||||||
Protein Properties | Length: 481aa MW: 53518.2 Da PI: 10.3713 | ||||||||
Description | MYB_related family protein | ||||||||
Gene Model |
|
Signature Domain? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | Myb_DNA-binding | 23.5 | 1.3e-07 | 9 | 46 | 2 | 33 |
SSS-HHHHHHHHHHHHHTTTT-HHHHHHHHT......T CS Myb_DNA-binding 2 grWTteEdellvdavkqlGggtWktIartmg......k 33 rW t++++ll+ a+ ++G+++W+ +a+++ Prupe.4G039700.1.p 9 SRWGTWLELLLAGAILRHGTRDWNQVAAELRartacpY 46 59*****************************6544444 PP |
Protein Features ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Pfam | PF00249 | 3.0E-6 | 10 | 60 | IPR001005 | SANT/Myb domain |
SuperFamily | SSF47370 | 5.89E-20 | 262 | 375 | IPR001487 | Bromodomain |
Gene3D | G3DSA:1.20.920.10 | 1.7E-18 | 268 | 376 | IPR001487 | Bromodomain |
SMART | SM00297 | 4.8E-18 | 271 | 375 | IPR001487 | Bromodomain |
Pfam | PF00439 | 2.0E-13 | 280 | 359 | IPR001487 | Bromodomain |
PROSITE profile | PS50014 | 10.76 | 286 | 356 | IPR001487 | Bromodomain |
CDD | cd04369 | 9.80E-8 | 286 | 370 | No hit | No description |
Gene Ontology ? help Back to Top | ||||||
---|---|---|---|---|---|---|
GO Term | GO Category | GO Description | ||||
GO:0005515 | Molecular Function | protein binding |
Sequence ? help Back to Top |
---|
Protein Sequence Length: 481 aa Download sequence Send to blast |
MGAEVIGGSR WGTWLELLLA GAILRHGTRD WNQVAAELRA RTACPYTFTP EVCKAKYNDL 60 RKRYSGCKAW FEDLRKKRME ELRQALKKSE DSIGSLESKL ETLKAEKGED GYNNYGSTQT 120 ESPVAYQKSV GHYPSAKEAF KDEPSAGSFT CEALTSCSPE CQIPVTESTE ETETKREASH 180 SSEHEKISSM EKLVGTLYVG VGLGGNLRKR RGKRKRKDCT SRDVKEASIG ESRLLDSPDA 240 VTALRCIENS NSECREEFAS SGAGDCNRSS TKNETDHLWN VFNSFLEHKS ASVFRHRLDS 300 QKRRRYKKLI HRHMDFDTIR SRISNHSVMS VKELFRDLLL LANNALVFYS KNTREYESAL 360 LLRDLTTKTL RQHLKDSSGK ATSANLSSNA LVCNPPGKPR SARPAGNRRL SVKATHAGNA 420 AAKTSNRSKK PSHANADSSP SVESFAVTKK TSGHPRKVGR RSVSQQNVTP VKGRKRGRTK 480 * |
Nucleic Localization Signal ? help Back to Top | |||
---|---|---|---|
No. | Start | End | Sequence |
1 | 60 | 77 | RKRYSGCKAWFEDLRKKR |
2 | 209 | 217 | RRGKRKRKD |
3 | 300 | 307 | QKRRRYKK |
Cis-element ? help Back to Top | |
---|---|
Source | Link |
PlantRegMap | Prupe.4G039700.1.p |
Regulation -- PlantRegMap ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
Source | Hit ID | E-value | Description | ||||
Refseq | XP_007212081.1 | 0.0 | uncharacterized protein LOC18778731 isoform X1 | ||||
TrEMBL | M5X2I9 | 0.0 | M5X2I9_PRUPE; Uncharacterized protein | ||||
STRING | EMJ13280 | 0.0 | (Prunus persica) |
Orthologous Group ? help Back to Top | |||
---|---|---|---|
Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Fabids | OGEF6304 | 17 | 23 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Hit ID | E-value | Description | ||||
AT3G60110.1 | 2e-18 | DNA-binding bromodomain-containing protein |
Link Out ? help Back to Top | |
---|---|
Phytozome | Prupe.4G039700.1.p |
Entrez Gene | 18778731 |