PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Prupe.3G310600.1.p | ||||||||
Common Name | PRUPE_ppa026582mg | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Maloideae; Amygdaleae; Prunus
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Family | NAC | ||||||||
Protein Properties | Length: 238aa MW: 27315.8 Da PI: 9.6844 | ||||||||
Description | NAC family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | NAM | 118.2 | 8.1e-37 | 15 | 144 | 1 | 128 |
NAM 1 lppGfrFhPtdeelvveyLkkkvegkkleleevikevdiykvePwdLpkkvkaeekewyfFskrdkkyatgkrknratksgyWkatgkdke 91 +p+G+rFhPtdeelv +yLk+kv++ +l++ ++i+++d+++++Pw Lp + +++ yfF ++ ++++ + ++ra+ gyWk gk+k+ Prupe.3G310600.1.p 15 MPVGYRFHPTDEELVIHYLKRKVHAAPLPA-SIIPDFDVFHTHPWCLPGCGGDVREKRYFFYNQITANE-IDDTKRAAGCGYWKPMGKEKQ 103 699***************************.89***************654444446688888887764.67899999************* PP NAM 92 vlsk.kgelvglkktLvfy...kgrapkgektdWvmheyrl 128 +++ ++e+vg++ktLvf + +++ +kt+W+mhey+l Prupe.3G310600.1.p 104 IVDPeSSEAVGIRKTLVFCrrkRRYHETQTKTRWLMHEYQL 144 **9967888**********54323445667*********97 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SuperFamily | SSF101941 | 1.96E-42 | 11 | 172 | IPR003441 | NAC domain |
PROSITE profile | PS51005 | 41.652 | 15 | 172 | IPR003441 | NAC domain |
Pfam | PF02365 | 5.2E-24 | 16 | 144 | IPR003441 | NAC domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0044212 | Molecular Function | transcription regulatory region DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 238 aa Download sequence Send to blast |
MEKLPNFVIN GGVKMPVGYR FHPTDEELVI HYLKRKVHAA PLPASIIPDF DVFHTHPWCL 60 PGCGGDVREK RYFFYNQITA NEIDDTKRAA GCGYWKPMGK EKQIVDPESS EAVGIRKTLV 120 FCRRKRRYHE TQTKTRWLMH EYQLLSSQVN PTHTQASKRE LENWVVYRVF QRKRKPQRSS 180 DIISQPSNSK RTRTQRLVEA ITPSSSSSCS SDITHLSSNA NRLDHDQEEN SSAAADN* |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
1ut4_A | 6e-25 | 13 | 178 | 15 | 171 | NO APICAL MERISTEM PROTEIN |
1ut4_B | 6e-25 | 13 | 178 | 15 | 171 | NO APICAL MERISTEM PROTEIN |
1ut7_A | 6e-25 | 13 | 178 | 15 | 171 | NO APICAL MERISTEM PROTEIN |
1ut7_B | 6e-25 | 13 | 178 | 15 | 171 | NO APICAL MERISTEM PROTEIN |
4dul_A | 6e-25 | 13 | 178 | 15 | 171 | NAC domain-containing protein 19 |
4dul_B | 6e-25 | 13 | 178 | 15 | 171 | NAC domain-containing protein 19 |
Search in ModeBase |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Prupe.3G310600.1.p |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_007216529.1 | 0.0 | NAC domain-containing protein 41 | ||||
TrEMBL | M5X883 | 1e-179 | M5X883_PRUPE; Uncharacterized protein | ||||
STRING | EMJ17728 | 1e-180 | (Prunus persica) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Fabids | OGEF704 | 34 | 139 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT5G13180.1 | 3e-42 | NAC domain containing protein 83 |
Link Out ? help Back to Top | |
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Phytozome | Prupe.3G310600.1.p |
Entrez Gene | 18782200 |