PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Prupe.3G274800.1.p | ||||||||
Common Name | PRUPE_ppa015976mg | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Maloideae; Amygdaleae; Prunus
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Family | MYB | ||||||||
Protein Properties | Length: 372aa MW: 40669.4 Da PI: 6.3861 | ||||||||
Description | MYB family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | Myb_DNA-binding | 51.2 | 2.9e-16 | 14 | 61 | 1 | 48 |
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48 rg WT+ Ed +l+ ++ ++G g+W++++++ g++R++k+c++rw +yl Prupe.3G274800.1.p 14 RGIWTAAEDAKLLAYISKHGVGNWTLVPKKAGLNRCGKSCRLRWTNYL 61 788*******************************************97 PP | |||||||
2 | Myb_DNA-binding | 47.6 | 3.8e-15 | 69 | 110 | 3 | 46 |
SS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHH CS Myb_DNA-binding 3 rWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqk 46 ++T++E+e ++++++ G++ W++Ia+ ++ gRt++++k++w++ Prupe.3G274800.1.p 69 SFTPQEEEHIINLHEAIGSR-WSLIAKLLP-GRTDNDVKNYWNT 110 79******************.*********.***********97 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Gene3D | G3DSA:1.10.10.60 | 9.2E-23 | 5 | 64 | IPR009057 | Homeodomain-like |
PROSITE profile | PS51294 | 24.968 | 9 | 65 | IPR017930 | Myb domain |
SuperFamily | SSF46689 | 4.69E-31 | 11 | 108 | IPR009057 | Homeodomain-like |
SMART | SM00717 | 1.1E-14 | 13 | 63 | IPR001005 | SANT/Myb domain |
Pfam | PF00249 | 1.1E-14 | 14 | 61 | IPR001005 | SANT/Myb domain |
CDD | cd00167 | 6.28E-12 | 17 | 61 | No hit | No description |
Gene3D | G3DSA:1.10.10.60 | 1.2E-23 | 65 | 116 | IPR009057 | Homeodomain-like |
PROSITE profile | PS51294 | 16.482 | 66 | 116 | IPR017930 | Myb domain |
SMART | SM00717 | 2.3E-12 | 66 | 114 | IPR001005 | SANT/Myb domain |
CDD | cd00167 | 4.09E-10 | 69 | 112 | No hit | No description |
Pfam | PF00249 | 1.1E-13 | 69 | 110 | IPR001005 | SANT/Myb domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0048658 | Biological Process | anther wall tapetum development | ||||
GO:0052545 | Biological Process | callose localization | ||||
GO:0055046 | Biological Process | microgametogenesis | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 372 aa Download sequence Send to blast |
MGRPPCCDKS NVKRGIWTAA EDAKLLAYIS KHGVGNWTLV PKKAGLNRCG KSCRLRWTNY 60 LRPDLIHDSF TPQEEEHIIN LHEAIGSRWS LIAKLLPGRT DNDVKNYWNT KLKKKLSKMG 120 IDPVTHKPFS QILSDYGNIS SLPSIDNQFG SFLKNLNNTF VPKSEPSSGI TGLPLGVNTY 180 SNMMMNPIGS DNSTASTLSL GIVAQFQEIN QDSVQVQPHF LNEVASSCSS SSPPHATDHQ 240 LSSQPTYLCQ QSHHEAQITP SSSFNWSEFL LHEPFSSADE LKQEQDFHGT MMSSSSALPT 300 LAGGSEHNLK ATTQACDFGS SAINIGGQRN NNLAHDQASS SSMTSFVDTI LGQDSEMQAA 360 FPELLDASFD Y* |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
1a5j_A | 2e-28 | 14 | 116 | 7 | 108 | B-MYB |
Search in ModeBase |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Prupe.3G274800.1.p |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_007217774.1 | 0.0 | transcription factor MYB35 | ||||
TrEMBL | M5XBU2 | 0.0 | M5XBU2_PRUPE; Uncharacterized protein | ||||
STRING | EMJ18973 | 0.0 | (Prunus persica) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Fabids | OGEF2942 | 34 | 74 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT3G28470.1 | 3e-83 | MYB family protein |
Link Out ? help Back to Top | |
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Phytozome | Prupe.3G274800.1.p |
Entrez Gene | 18782369 |