PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Prupe.3G264600.1.p

Common Name

PRUPE_ppa007883mg

Organism

Prunus persica

Taxonomic ID

3760

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Maloideae; Amygdaleae; Prunus

Family

NAC

Protein Properties

Length: 353aa MW: 40163 Da PI: 7.0929

Description

NAC family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Prupe.3G264600.1.p	genome	JGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	NAM	180.5	4.2e-56	16	142	1	129
NAM 1 lppGfrFhPtdeelvveyLkkkvegkkleleevikevdiykvePwdLpkkvkaeekewyfFskrdkkyatgkrknratksgyWkatgkdke 91 lppGfrFhPtdeel+++yL +kv ++ + + ++i evd++k+ePwdLp k+k +e+ewyfF+ rd+ky+tg r+nrat++gyWkatgkdke Prupe.3G264600.1.p 16 LPPGFRFHPTDEELISHYLSPKVLDSCFCA-TAIGEVDLNKCEPWDLPWKAKMGEREWYFFCVRDRKYPTGLRTNRATDAGYWKATGKDKE 105 79**********************9888.88***********888999********************************* PP NAM 92 vlskkgelvglkktLvfykgrapkgektdWvmheyrle 129 +++ ++lvg+kktLvfykgrapkgekt+Wvmheyrle Prupe.3G264600.1.p 106 IYK-AKTLVGMKKTLVFYKGRAPKGEKTNWVMHEYRLE 142 .999****************************85 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SuperFamily	SSF101941	1.57E-63	13	166	IPR003441	NAC domain
PROSITE profile	PS51005	59.387	16	166	IPR003441	NAC domain
Pfam	PF02365	3.3E-30	17	141	IPR003441	NAC domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0005634	Cellular Component	nucleus
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 353 aa Download sequence Send to blast
MENASGFSKE DEKMELPPGF RFHPTDEELI SHYLSPKVLD SCFCATAIGE VDLNKCEPWD 60 LPWKAKMGER EWYFFCVRDR KYPTGLRTNR ATDAGYWKAT GKDKEIYKAK TLVGMKKTLV 120 FYKGRAPKGE KTNWVMHEYR LEGKYSAYNL PKTAKNEWVI CRIFQKSSGG KKTHISGLVR 180 LGSFGNELRP SLLPPLMDSS PYNSDTRTTV CETSHVSGFS DPMEDQRTQD DIIDSFQHNN 240 HHNSSNSNHN PLLNSSSRSN PSAHLNPFYS NQITPNIGFL QHQDSVLMQD QSFLRMLLEN 300 QAPNLRRSAK TELSQDTGLS MDVSSVVSNR EMVQDDPSYS SAPIEFDSLW NY*

Sequence ? help Back to Top

Protein Sequence Length: 353 aa Download sequence Send to blast

MENASGFSKE DEKMELPPGF RFHPTDEELI SHYLSPKVLD SCFCATAIGE VDLNKCEPWD  60
LPWKAKMGER EWYFFCVRDR KYPTGLRTNR ATDAGYWKAT GKDKEIYKAK TLVGMKKTLV  120
FYKGRAPKGE KTNWVMHEYR LEGKYSAYNL PKTAKNEWVI CRIFQKSSGG KKTHISGLVR  180
LGSFGNELRP SLLPPLMDSS PYNSDTRTTV CETSHVSGFS DPMEDQRTQD DIIDSFQHNN  240
HHNSSNSNHN PLLNSSSRSN PSAHLNPFYS NQITPNIGFL QHQDSVLMQD QSFLRMLLEN  300
QAPNLRRSAK TELSQDTGLS MDVSSVVSNR EMVQDDPSYS SAPIEFDSLW NY*

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
1ut4_A	2e-53	13	172	14	171	NO APICAL MERISTEM PROTEIN
1ut4_B	2e-53	13	172	14	171	NO APICAL MERISTEM PROTEIN
1ut7_A	2e-53	13	172	14	171	NO APICAL MERISTEM PROTEIN
1ut7_B	2e-53	13	172	14	171	NO APICAL MERISTEM PROTEIN
3swm_A	2e-53	13	172	17	174	NAC domain-containing protein 19
3swm_B	2e-53	13	172	17	174	NAC domain-containing protein 19
3swm_C	2e-53	13	172	17	174	NAC domain-containing protein 19
3swm_D	2e-53	13	172	17	174	NAC domain-containing protein 19
3swp_A	2e-53	13	172	17	174	NAC domain-containing protein 19
3swp_B	2e-53	13	172	17	174	NAC domain-containing protein 19
3swp_C	2e-53	13	172	17	174	NAC domain-containing protein 19
3swp_D	2e-53	13	172	17	174	NAC domain-containing protein 19
4dul_A	2e-53	13	172	14	171	NAC domain-containing protein 19
4dul_B	2e-53	13	172	14	171	NAC domain-containing protein 19
Search in ModeBase

Functional Description ? help Back to Top
Source	Description
UniProt	Binds to the promoter regions of genes involved in chlorophyll catabolic processes, such as NYC1, SGR1, SGR2 and PAO. {ECO:0000269\|PubMed:27021284}.

Cis-element ? help Back to Top
Source	Link
PlantRegMap	Prupe.3G264600.1.p

Regulation -- Description ? help Back to Top
Source	Description
UniProt	INDUCTION: Repressed by the microRNA miR164. {ECO:0000269\|PubMed:15294871, ECO:0000269\|PubMed:17098808}.

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	KR822711	0.0	KR822711.1 Prunus persica NAC transcription factor NAC4 (NAC4) mRNA, complete cds.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_007215615.1	0.0	NAC domain-containing protein 100
Swissprot	Q9FLJ2	1e-141	NC100_ARATH; NAC domain-containing protein 100
TrEMBL	M5WSZ2	0.0	M5WSZ2_PRUPE; Uncharacterized protein
STRING	EMJ16814	0.0	(Prunus persica)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Fabids	OGEF409	34	171

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G61430.1	1e-130	NAC domain containing protein 100

Link Out ? help Back to Top
Phytozome	Prupe.3G264600.1.p
Entrez Gene	18784364

Publications ? help Back to Top
Duarte JM, et al. Expression pattern shifts following duplication indicative of subfunctionalization and neofunctionalization in regulatory genes of Arabidopsis. Mol. Biol. Evol., 2006. 23(2): p. 469-78 [PMID:16280546]