PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Prupe.3G227800.1.p
Common NamePRUPE_ppa026553mg
Organism
Prunus persica
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Maloideae; Amygdaleae; Prunus
Family MYB
Protein Properties Length: 280aa    MW: 31707 Da    PI: 4.902
Description MYB family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Prupe.3G227800.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding51.81.8e-161461148
                        TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS
     Myb_DNA-binding  1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48
                        +g WT+eEd +l+ +v+++G  +W+  +r  g+ R++k+c++rw +yl
  Prupe.3G227800.1.p 14 KGTWTPEEDRKLIAYVTRYGCWNWRQLPRFAGLSRCGKSCRLRWMNYL 61
                        799*****************99************************97 PP
2Myb_DNA-binding58.81.2e-1867111147
                         TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHH CS
     Myb_DNA-binding   1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqky 47 
                         rg+ ++eE+e ++++++qlG++ W++Ia+ ++ gRt++++k++w++ 
  Prupe.3G227800.1.p  67 RGNYSQEEEETIIKLHQQLGNR-WSAIAAQLP-GRTDNEIKNHWHTN 111
                         899*******************.*********.***********986 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5129415.629961IPR017930Myb domain
SuperFamilySSF466892.93E-3011108IPR009057Homeodomain-like
SMARTSM007171.7E-111363IPR001005SANT/Myb domain
PfamPF002497.2E-141461IPR001005SANT/Myb domain
Gene3DG3DSA:1.10.10.603.4E-231568IPR009057Homeodomain-like
CDDcd001672.02E-91661No hitNo description
PROSITE profilePS5129425.5562116IPR017930Myb domain
SMARTSM007173.2E-1766114IPR001005SANT/Myb domain
PfamPF002491.3E-1667111IPR001005SANT/Myb domain
Gene3DG3DSA:1.10.10.601.7E-2669116IPR009057Homeodomain-like
CDDcd001674.46E-1269112No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 280 aa     Download sequence    Send to blast
MVRTPCRDEN GMKKGTWTPE EDRKLIAYVT RYGCWNWRQL PRFAGLSRCG KSCRLRWMNY  60
LRPNIKRGNY SQEEEETIIK LHQQLGNRWS AIAAQLPGRT DNEIKNHWHT NLKKRMNNKH  120
YKSSSSSSSS SSSSSSSVTQ TDDQETPNCS GLVELAVDQL TKSATILPNA DETADHLQVP  180
QTDHDHLDNI FQLSSPQPSS SEVSSLTTDN APVVLSSMNN DDWVNYVEED NVISSMEAYA  240
DVQFGNDFWT EPFLADTSYI PCGLLTPSMD SEFFYPLFD*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1a5j_A3e-28141177109B-MYB
Search in ModeBase
Cis-element ? help Back to Top
SourceLink
PlantRegMapPrupe.3G227800.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_007216710.10.0transcription factor MYB14
TrEMBLM5WW600.0M5WW60_PRUPE; MYB191
STRINGEMJ179090.0(Prunus persica)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF35633186
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G28110.17e-58myb domain protein 41