PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Prupe.3G158700.1.p | ||||||||
Common Name | MYB19, PRUPE_ppa010716mg | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Maloideae; Amygdaleae; Prunus
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Family | MYB | ||||||||
Protein Properties | Length: 239aa MW: 26775.5 Da PI: 9.5585 | ||||||||
Description | MYB family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | Myb_DNA-binding | 53.3 | 6.2e-17 | 13 | 60 | 1 | 48 |
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48 +g+W+++Ed++l+d++k +G g+W++ ++ g++R++k+c++rw +yl Prupe.3G158700.1.p 13 KGAWSKQEDQKLIDYIKAHGEGCWRSLPKAAGLHRCGKSCRLRWINYL 60 79********************************************97 PP | |||||||
2 | Myb_DNA-binding | 52.2 | 1.4e-16 | 66 | 110 | 1 | 47 |
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHH CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqky 47 rg++ ++E++l+++++++lG++ W++Ia +++ gRt++++k++w+++ Prupe.3G158700.1.p 66 RGNFEQDEEDLIIKLHALLGNR-WSLIAGRLP-GRTDNEVKNYWNSH 110 899*******************.*********.***********987 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Gene3D | G3DSA:1.10.10.60 | 5.9E-24 | 4 | 63 | IPR009057 | Homeodomain-like |
PROSITE profile | PS51294 | 17.504 | 8 | 60 | IPR017930 | Myb domain |
SuperFamily | SSF46689 | 1.76E-28 | 11 | 107 | IPR009057 | Homeodomain-like |
SMART | SM00717 | 3.0E-14 | 12 | 62 | IPR001005 | SANT/Myb domain |
Pfam | PF00249 | 4.3E-15 | 13 | 60 | IPR001005 | SANT/Myb domain |
CDD | cd00167 | 8.40E-11 | 15 | 60 | No hit | No description |
PROSITE profile | PS51294 | 26.305 | 61 | 115 | IPR017930 | Myb domain |
Gene3D | G3DSA:1.10.10.60 | 7.0E-26 | 64 | 116 | IPR009057 | Homeodomain-like |
SMART | SM00717 | 5.1E-15 | 65 | 113 | IPR001005 | SANT/Myb domain |
Pfam | PF00249 | 6.0E-15 | 66 | 110 | IPR001005 | SANT/Myb domain |
CDD | cd00167 | 1.23E-10 | 68 | 111 | No hit | No description |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 239 aa Download sequence Send to blast |
MRKPCCEKEG TNKGAWSKQE DQKLIDYIKA HGEGCWRSLP KAAGLHRCGK SCRLRWINYL 60 RPDIKRGNFE QDEEDLIIKL HALLGNRWSL IAGRLPGRTD NEVKNYWNSH IRKKLIKMGI 120 DPNNHRLNQI IPRPNPQNDC VSAAATSSGS MSNISACTKA PIKSSREIDQ RASQATSVLE 180 DETSGSSSRD LNLDLTIAFP NPPLLVGEEM QKNIKGSFTM AREIETNLQH SPTLALFR* |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
1a5j_A | 3e-28 | 13 | 115 | 7 | 108 | B-MYB |
Search in ModeBase |
Expression -- Description ? help Back to Top | ||||||
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Source | Description | |||||
Uniprot | DEVELOPMENTAL STAGE: Expression in flowers increases as the flowers develop. {ECO:0000269|PubMed:1840903}. | |||||
Uniprot | TISSUE SPECIFICITY: Expressed in roots, stems, leaves, seed pods and flowers. {ECO:0000269|PubMed:1840903}. |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Transcription factor. {ECO:0000305}. |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Prupe.3G158700.1.p |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | KT159235 | 0.0 | KT159235.1 Prunus persica R2R3-MYB transcription factor (MYB19) mRNA, complete cds. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_007215900.1 | 1e-178 | transcription factor MYB6 | ||||
Swissprot | P81393 | 1e-75 | MYB08_ANTMA; Myb-related protein 308 | ||||
TrEMBL | M5WTU2 | 1e-177 | M5WTU2_PRUPE; R2R3-MYB transcription factor | ||||
STRING | EMJ17099 | 1e-177 | (Prunus persica) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Fabids | OGEF264 | 34 | 221 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT4G09460.1 | 1e-77 | myb domain protein 6 |
Link Out ? help Back to Top | |
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Phytozome | Prupe.3G158700.1.p |
Entrez Gene | 18782221 |
Publications ? help Back to Top | |||
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