PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Prupe.3G090400.1.p | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Maloideae; Amygdaleae; Prunus
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Family | FAR1 | ||||||||
Protein Properties | Length: 668aa MW: 77399.4 Da PI: 8.1343 | ||||||||
Description | FAR1 family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | FAR1 | 69.6 | 7.5e-22 | 60 | 143 | 1 | 89 |
FAR1 1 kfYneYAkevGFsvrkskskkskrngeitkrtfvCskegkreeekkktekerrtraetrtgCkaklkvkkekdgkwevtkleleHnHel 89 ++Yn YAkevGF+vr+++s +++++e + + ++Cs +g+++ ++ + r r+etrtgC a+l++++ ++++w+v ++ leHnH l Prupe.3G090400.1.p 60 NYYNCYAKEVGFRVRVKNSWFKRNSREKYGAVLCCSSQGFKRIKDVN-----RLRKETRTGCPAMLRMRLVDSKRWRVLEVTLEHNHLL 143 69*****************************************9988.....99*********************************87 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Pfam | PF03101 | 5.9E-19 | 60 | 143 | IPR004330 | FAR1 DNA binding domain |
Pfam | PF10551 | 7.6E-33 | 262 | 355 | IPR018289 | MULE transposase domain |
Pfam | PF04434 | 1.6E-4 | 543 | 581 | IPR007527 | Zinc finger, SWIM-type |
PROSITE profile | PS50966 | 9.891 | 549 | 585 | IPR007527 | Zinc finger, SWIM-type |
SMART | SM00575 | 1.1E-6 | 560 | 587 | IPR006564 | Zinc finger, PMZ-type |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0008270 | Molecular Function | zinc ion binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 668 aa Download sequence Send to blast |
MEVASANIEQ VPDGECNDIV TDRDGVLTEL DVQNGVLEGR KEFVAPAVGM EFESYDDAYN 60 YYNCYAKEVG FRVRVKNSWF KRNSREKYGA VLCCSSQGFK RIKDVNRLRK ETRTGCPAML 120 RMRLVDSKRW RVLEVTLEHN HLLGAKIYKS IKKVGSGMKR KSQSSSDAEK RTIKLYRALV 180 IDSGVDGTSN LNPTDIRNFP DHPNQLNLKK GDTQAIYNYL CRMQLTNPNF FYLMDLNDDG 240 RLRNVFWMDA RCRAACGYFA DVIYFDNTYL SNKYEIPLVA FVGINHHGQT VLLGCALLAG 300 ETTESYTWLF RAWLTCVSGQ FPQTIITDRC KALQSAIAEV FPRCHHRFGL SHIIKKVPEK 360 LGGLRNYDAI RKALIKAVYE TLKVIEFEAA WGFMIQRFGV GDHEWLHSLY EDRFRWAPVY 420 LKETFFAGMS AARPGETLSP FFDRYVHKQT PLKEFLDKYE LALQKKHKEE ALADIESRSS 480 SPTLKTRCSF EFQLSKVYTR EIFKNFQFEV EEMYSCFSTT QLHVDGPIII FLVKERVVVE 540 GNRREIRDYE VLYNRTAGEV RCICSCFNFY GYLCRHALCV LNFNGVEEIP SKYILSRWKK 600 DFKRIYIPDH GSSNADDTDR MQWFNQLYRS ALQIVEEGVI SLDHYKVALQ AFEESLNRVH 660 DVEDKHE* |
Expression -- Description ? help Back to Top | ||||||
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Source | Description | |||||
Uniprot | TISSUE SPECIFICITY: Expressed in hypocotyls, rosette and cauline leaves, inflorescences stems, flowers and siliques. {ECO:0000269|PubMed:15591448}. |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Putative transcription activator involved in regulating light control of development. May have a role in controlling flowering time. {ECO:0000269|PubMed:15591448}. |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Prupe.3G090400.1.p |
Regulation -- Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | INDUCTION: Up-regulated in hypocotyls by far-red light treatment. {ECO:0000269|PubMed:15591448}. |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_007216973.2 | 0.0 | protein FAR1-RELATED SEQUENCE 6 | ||||
Refseq | XP_020416629.1 | 0.0 | protein FAR1-RELATED SEQUENCE 6 | ||||
Swissprot | Q9SSQ4 | 0.0 | FRS6_ARATH; Protein FAR1-RELATED SEQUENCE 6 | ||||
TrEMBL | A0A251PXJ9 | 0.0 | A0A251PXJ9_PRUPE; Uncharacterized protein | ||||
STRING | XP_008228719.1 | 0.0 | (Prunus mume) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Fabids | OGEF40 | 30 | 530 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G52520.1 | 0.0 | FAR1-related sequence 6 |
Link Out ? help Back to Top | |
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Phytozome | Prupe.3G090400.1.p |
Publications ? help Back to Top | |||
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