PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Prupe.3G045300.5.p
Common NamePRUPE_ppa016498mg
Organism
Prunus persica
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Maloideae; Amygdaleae; Prunus
Family MYB_related
Protein Properties Length: 309aa    MW: 33693.1 Da    PI: 10.1502
Description MYB_related family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Prupe.3G045300.5.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding36.79.4e-12556147
                        TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHT.....TTS-HHHHHHHHHHH CS
     Myb_DNA-binding  1 rgrWTteEdellvdavkqlGggtWktIartmg.....kgRtlkqcksrwqky 47
                        +++WT+eE+e l+ +v+++G+g Wk I +         +R+  ++k++w+++
  Prupe.3G045300.5.p  5 KQKWTAEEEEGLLAGVAKHGPGKWKNILKDPEfasvlIHRSNIDLKDKWRNL 56
                        79**********************************999***********96 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5129415.131161IPR017930Myb domain
SuperFamilySSF466891.36E-15258IPR009057Homeodomain-like
Gene3DG3DSA:1.10.10.605.5E-14456IPR009057Homeodomain-like
SMARTSM007173.6E-7459IPR001005SANT/Myb domain
PfamPF002497.5E-9556IPR001005SANT/Myb domain
CDDcd116601.85E-21656No hitNo description
SMARTSM005264.9E-12142207IPR005818Linker histone H1/H5, domain H15
PROSITE profilePS5150420.61142212IPR005818Linker histone H1/H5, domain H15
Gene3DG3DSA:1.10.10.103.2E-12143219IPR011991Winged helix-turn-helix DNA-binding domain
SuperFamilySSF467851.9E-13143220IPR011991Winged helix-turn-helix DNA-binding domain
PfamPF005385.4E-9145207IPR005818Linker histone H1/H5, domain H15
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006334Biological Processnucleosome assembly
GO:0009651Biological Processresponse to salt stress
GO:0009723Biological Processresponse to ethylene
GO:0009733Biological Processresponse to auxin
GO:0009751Biological Processresponse to salicylic acid
GO:0009753Biological Processresponse to jasmonic acid
GO:0046686Biological Processresponse to cadmium ion
GO:0000786Cellular Componentnucleosome
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 309 aa     Download sequence    Send to blast
MGNQKQKWTA EEEEGLLAGV AKHGPGKWKN ILKDPEFASV LIHRSNIDLK DKWRNLSVST  60
SGHGSKDRPR GTKVKNRVSA QHLVRNSAPT ASVRPNASPA SAPPNSSPAS VRPSASPASV  120
CPNASPDAMM DDAVNSAPEL KSASQYDPMI FQALSTMKDM NGSDLGAILN FIEQRHEVPV  180
PPNFRRLLGP RLRRLVSQGK LEKVQNGYKL KKDATFGTKT PTLTRNQRDV RPRKLQNSGS  240
MTFTETVQDA AETAAHKLAD AEDKSFVAAV AMKEADRISK MTEDNESILQ LIEEIYERCS  300
RGEVVALA*
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00652PBMTransfer from LOC_Os01g51154Download
Motif logo
Cis-element ? help Back to Top
SourceLink
PlantRegMapPrupe.3G045300.5.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_020415013.10.0telomere repeat-binding factor 4
RefseqXP_020415014.10.0telomere repeat-binding factor 4
RefseqXP_020415015.10.0telomere repeat-binding factor 4
TrEMBLA0A251PYE70.0A0A251PYE7_PRUPE; Uncharacterized protein
STRINGEMJ181400.0(Prunus persica)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G17520.14e-63MYB_related family protein