PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Prupe.3G045300.4.p | ||||||||
Common Name | PRUPE_ppa016498mg | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Maloideae; Amygdaleae; Prunus
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Family | MYB_related | ||||||||
Protein Properties | Length: 309aa MW: 33693.1 Da PI: 10.1502 | ||||||||
Description | MYB_related family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | Myb_DNA-binding | 36.7 | 9.4e-12 | 5 | 56 | 1 | 47 |
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHT.....TTS-HHHHHHHHHHH CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmg.....kgRtlkqcksrwqky 47 +++WT+eE+e l+ +v+++G+g Wk I + +R+ ++k++w+++ Prupe.3G045300.4.p 5 KQKWTAEEEEGLLAGVAKHGPGKWKNILKDPEfasvlIHRSNIDLKDKWRNL 56 79**********************************999***********96 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS51294 | 15.131 | 1 | 61 | IPR017930 | Myb domain |
SuperFamily | SSF46689 | 1.36E-15 | 2 | 58 | IPR009057 | Homeodomain-like |
Gene3D | G3DSA:1.10.10.60 | 5.5E-14 | 4 | 56 | IPR009057 | Homeodomain-like |
SMART | SM00717 | 3.6E-7 | 4 | 59 | IPR001005 | SANT/Myb domain |
Pfam | PF00249 | 7.5E-9 | 5 | 56 | IPR001005 | SANT/Myb domain |
CDD | cd11660 | 1.85E-21 | 6 | 56 | No hit | No description |
SMART | SM00526 | 4.9E-12 | 142 | 207 | IPR005818 | Linker histone H1/H5, domain H15 |
PROSITE profile | PS51504 | 20.61 | 142 | 212 | IPR005818 | Linker histone H1/H5, domain H15 |
Gene3D | G3DSA:1.10.10.10 | 3.2E-12 | 143 | 219 | IPR011991 | Winged helix-turn-helix DNA-binding domain |
SuperFamily | SSF46785 | 1.9E-13 | 143 | 220 | IPR011991 | Winged helix-turn-helix DNA-binding domain |
Pfam | PF00538 | 5.4E-9 | 145 | 207 | IPR005818 | Linker histone H1/H5, domain H15 |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006334 | Biological Process | nucleosome assembly | ||||
GO:0009651 | Biological Process | response to salt stress | ||||
GO:0009723 | Biological Process | response to ethylene | ||||
GO:0009733 | Biological Process | response to auxin | ||||
GO:0009751 | Biological Process | response to salicylic acid | ||||
GO:0009753 | Biological Process | response to jasmonic acid | ||||
GO:0046686 | Biological Process | response to cadmium ion | ||||
GO:0000786 | Cellular Component | nucleosome | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 309 aa Download sequence Send to blast |
MGNQKQKWTA EEEEGLLAGV AKHGPGKWKN ILKDPEFASV LIHRSNIDLK DKWRNLSVST 60 SGHGSKDRPR GTKVKNRVSA QHLVRNSAPT ASVRPNASPA SAPPNSSPAS VRPSASPASV 120 CPNASPDAMM DDAVNSAPEL KSASQYDPMI FQALSTMKDM NGSDLGAILN FIEQRHEVPV 180 PPNFRRLLGP RLRRLVSQGK LEKVQNGYKL KKDATFGTKT PTLTRNQRDV RPRKLQNSGS 240 MTFTETVQDA AETAAHKLAD AEDKSFVAAV AMKEADRISK MTEDNESILQ LIEEIYERCS 300 RGEVVALA* |
Binding Motif ? help Back to Top | |||
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Motif ID | Method | Source | Motif file |
MP00652 | PBM | Transfer from LOC_Os01g51154 | Download |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Prupe.3G045300.4.p |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | Retrieve |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_020415013.1 | 0.0 | telomere repeat-binding factor 4 | ||||
Refseq | XP_020415014.1 | 0.0 | telomere repeat-binding factor 4 | ||||
Refseq | XP_020415015.1 | 0.0 | telomere repeat-binding factor 4 | ||||
TrEMBL | A0A251PYE7 | 0.0 | A0A251PYE7_PRUPE; Uncharacterized protein | ||||
STRING | EMJ18140 | 0.0 | (Prunus persica) |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G17520.1 | 4e-63 | MYB_related family protein |
Link Out ? help Back to Top | |
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Phytozome | Prupe.3G045300.4.p |
Entrez Gene | 18782232 |