PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Prupe.3G042300.1.p | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Maloideae; Amygdaleae; Prunus
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Family | MYB | ||||||||
Protein Properties | Length: 290aa MW: 32827.9 Da PI: 6.6662 | ||||||||
Description | MYB family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | Myb_DNA-binding | 46.6 | 7.9e-15 | 15 | 62 | 1 | 48 |
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48 rg+WT Ed++l ++++ +G g W+ +++ g++R++k+c++rw++yl Prupe.3G042300.1.p 15 RGAWTGMEDKILTEYIRVHGEGKWRNLPKRAGLKRCGKSCRLRWLNYL 62 89********************************************97 PP | |||||||
2 | Myb_DNA-binding | 51.8 | 1.9e-16 | 68 | 111 | 1 | 46 |
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHH CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqk 46 rg+ T +E+el+++++k+lG++ W++Ia +++ gRt++++k++w++ Prupe.3G042300.1.p 68 RGNITRDEEELIIRLHKLLGNR-WSLIAGRLP-GRTDNEIKNYWNT 111 7899******************.*********.***********98 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS51294 | 14.756 | 10 | 62 | IPR017930 | Myb domain |
SuperFamily | SSF46689 | 2.97E-27 | 13 | 109 | IPR009057 | Homeodomain-like |
SMART | SM00717 | 2.4E-12 | 14 | 64 | IPR001005 | SANT/Myb domain |
Pfam | PF00249 | 4.6E-13 | 15 | 62 | IPR001005 | SANT/Myb domain |
Gene3D | G3DSA:1.10.10.60 | 7.4E-22 | 16 | 69 | IPR009057 | Homeodomain-like |
CDD | cd00167 | 1.05E-9 | 17 | 62 | No hit | No description |
PROSITE profile | PS51294 | 25.635 | 63 | 117 | IPR017930 | Myb domain |
SMART | SM00717 | 2.8E-15 | 67 | 115 | IPR001005 | SANT/Myb domain |
Pfam | PF00249 | 2.7E-14 | 68 | 111 | IPR001005 | SANT/Myb domain |
Gene3D | G3DSA:1.10.10.60 | 4.4E-24 | 70 | 117 | IPR009057 | Homeodomain-like |
CDD | cd00167 | 7.86E-12 | 72 | 113 | No hit | No description |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006633 | Biological Process | fatty acid biosynthetic process | ||||
GO:0006970 | Biological Process | response to osmotic stress | ||||
GO:0010023 | Biological Process | proanthocyanidin biosynthetic process | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 290 aa Download sequence Send to blast |
MGRSPCCSKD EGLNRGAWTG MEDKILTEYI RVHGEGKWRN LPKRAGLKRC GKSCRLRWLN 60 YLRPDIKRGN ITRDEEELII RLHKLLGNRW SLIAGRLPGR TDNEIKNYWN TTIGKKIQGH 120 PFSDGNRKPP KQTQENPKPT QPPKVDTNSY TKVVRTKASR CTKVFIPQEA QNLDDQIRDD 180 NDHVSNNAPL VAVDQVTDQV AGIEEPLSPI FPLDDENSSC KFMVDFKVDE NFLSDFLNVD 240 FSELYNNGNY EGGSVASATT CDKVPDFQSS SMVPVVDYEL DWLIDNTAH* |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
1h8a_C | 3e-26 | 13 | 117 | 25 | 128 | MYB TRANSFORMING PROTEIN |
Search in ModeBase |
Expression -- Description ? help Back to Top | ||||||
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Source | Description | |||||
Uniprot | DEVELOPMENTAL STAGE: Highly expressed from the very early stages of embryogenesis to the globular stage, decreases rapidly from the late heart-torpedo stage and did not persist after the completion of embryogenesis. | |||||
Uniprot | TISSUE SPECIFICITY: Expressed at a high level in immature siliques and at a lower level in flowers. Undetected in young seedlings, roots, leaves and inflorescence stems. |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Transcription activator, when associated with BHLH2/EGL3/MYC146, BHLH12/MYC1, or BHLH42/TT8. Involved in the control of flavonoid late metabolism in developing siliques. Plays a key role in determining the tissue-specific activation of leucoanthocyanidin reductase (BANYULS). {ECO:0000269|PubMed:15361138}. |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Prupe.3G042300.1.p |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | KR259850 | 0.0 | KR259850.1 Prunus avium cultivar Tieton R2R3 MYB transcription factor (MYB11) mRNA, complete cds. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_020416075.1 | 0.0 | myb-related protein 308 | ||||
Swissprot | Q9FJA2 | 8e-60 | TT2_ARATH; Transcription factor TT2 | ||||
TrEMBL | A0A251PV21 | 0.0 | A0A251PV21_PRUPE; Uncharacterized protein | ||||
STRING | XP_008228205.1 | 0.0 | (Prunus mume) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Fabids | OGEF31 | 34 | 817 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT5G35550.1 | 3e-62 | MYB family protein |
Link Out ? help Back to Top | |
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Phytozome | Prupe.3G042300.1.p |