PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Prupe.3G014900.2.p | ||||||||
Common Name | PRUPE_ppa005083mg | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Maloideae; Amygdaleae; Prunus
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Family | MYB_related | ||||||||
Protein Properties | Length: 483aa MW: 52821.6 Da PI: 6.0458 | ||||||||
Description | MYB_related family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | Myb_DNA-binding | 52.9 | 8.4e-17 | 52 | 96 | 1 | 47 |
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHH CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqky 47 r rWT+eE++++++a k++G W++I +++g ++t+ q++s+ qk+ Prupe.3G014900.2.p 52 RERWTEEEHKKFLEALKLYGRA-WRKIEEHVG-TKTAVQIRSHAQKF 96 78******************88.*********.************98 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SuperFamily | SSF46689 | 4.71E-17 | 46 | 100 | IPR009057 | Homeodomain-like |
PROSITE profile | PS51294 | 21.733 | 47 | 101 | IPR017930 | Myb domain |
Gene3D | G3DSA:1.10.10.60 | 1.1E-9 | 49 | 98 | IPR009057 | Homeodomain-like |
TIGRFAMs | TIGR01557 | 5.8E-17 | 50 | 99 | IPR006447 | Myb domain, plants |
SMART | SM00717 | 1.2E-13 | 51 | 99 | IPR001005 | SANT/Myb domain |
Pfam | PF00249 | 3.0E-14 | 52 | 95 | IPR001005 | SANT/Myb domain |
CDD | cd00167 | 7.22E-11 | 54 | 97 | No hit | No description |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0007623 | Biological Process | circadian rhythm | ||||
GO:0009734 | Biological Process | auxin-activated signaling pathway | ||||
GO:0010600 | Biological Process | regulation of auxin biosynthetic process | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0003677 | Molecular Function | DNA binding | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 483 aa Download sequence Send to blast |
MDQYDGSRSE SVLSANNGFS FSASGLQLKD QFSNGNDSAP KARKPYTITK QRERWTEEEH 60 KKFLEALKLY GRAWRKIEEH VGTKTAVQIR SHAQKFFSKV ARDSNGSNEI SEEPIDIPPP 120 RPKRKPMRPY PRKLVHPVNK ETFIVERPTR SASPNLSVSE PENQSPTSVL SVIGSDTLGS 180 ADSNTPSRSL SPVSSAADVH GVDLNQSEPP NPSLEESGST SPAVAENGSL PNVQLSMKLE 240 LFPTDNVDAS GVSSEEVSAR SLKLFGRTVL VTDSHRPSSP TLGTSKSLPS DVKEEKPVQI 300 STPCNFTATE SASGSVEHVW DNFPYGVHPG MYFMQFQNQN SNLVEPGSAY PVPWWTLCPK 360 LPFPFIPFHK PQAVKEHFDG NLGDPKEVEK EGSWTGSDAG SVNDEENGDK CLGIETEGKE 420 QEPNSVLQFK ASANSAFSEL RASPSPGKCR KGFVPYKRCL AERDTSTIAS EDRDGKRVDL 480 SL* |
Expression -- UniGene ? help Back to Top | ||||||
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UniGene ID | E-value | Expressed in | ||||
Ppe.2711 | 0.0 | fruit| leaf |
Binding Motif ? help Back to Top | |||
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Motif ID | Method | Source | Motif file |
MP00515 | DAP | Transfer from AT5G17300 | Download |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Prupe.3G014900.2.p |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | Retrieve |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_020414758.1 | 0.0 | protein REVEILLE 1 isoform X2 | ||||
TrEMBL | A0A251PTM5 | 0.0 | A0A251PTM5_PRUPE; Uncharacterized protein | ||||
STRING | EMJ16503 | 0.0 | (Prunus persica) |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT5G17300.1 | 3e-69 | MYB_related family protein |
Link Out ? help Back to Top | |
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Phytozome | Prupe.3G014900.2.p |
Entrez Gene | 18782484 |