PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Prupe.3G014900.1.p | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Maloideae; Amygdaleae; Prunus
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Family | MYB_related | ||||||||
Protein Properties | Length: 497aa MW: 54164.2 Da PI: 5.8743 | ||||||||
Description | MYB_related family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | Myb_DNA-binding | 52.9 | 8.7e-17 | 66 | 110 | 1 | 47 |
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHH CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqky 47 r rWT+eE++++++a k++G W++I +++g ++t+ q++s+ qk+ Prupe.3G014900.1.p 66 RERWTEEEHKKFLEALKLYGRA-WRKIEEHVG-TKTAVQIRSHAQKF 110 78******************88.*********.************98 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SuperFamily | SSF46689 | 4.86E-17 | 60 | 114 | IPR009057 | Homeodomain-like |
PROSITE profile | PS51294 | 21.733 | 61 | 115 | IPR017930 | Myb domain |
Gene3D | G3DSA:1.10.10.60 | 1.1E-9 | 63 | 112 | IPR009057 | Homeodomain-like |
TIGRFAMs | TIGR01557 | 6.1E-17 | 64 | 113 | IPR006447 | Myb domain, plants |
SMART | SM00717 | 1.2E-13 | 65 | 113 | IPR001005 | SANT/Myb domain |
Pfam | PF00249 | 3.1E-14 | 66 | 109 | IPR001005 | SANT/Myb domain |
CDD | cd00167 | 7.63E-11 | 68 | 111 | No hit | No description |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0007623 | Biological Process | circadian rhythm | ||||
GO:0009734 | Biological Process | auxin-activated signaling pathway | ||||
GO:0010600 | Biological Process | regulation of auxin biosynthetic process | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0003677 | Molecular Function | DNA binding | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 497 aa Download sequence Send to blast |
MVGGLMLSPD MAAAQDQYDG SRSESVLSAN NGFSFSASGL QLKDQFSNGN DSAPKARKPY 60 TITKQRERWT EEEHKKFLEA LKLYGRAWRK IEEHVGTKTA VQIRSHAQKF FSKVARDSNG 120 SNEISEEPID IPPPRPKRKP MRPYPRKLVH PVNKETFIVE RPTRSASPNL SVSEPENQSP 180 TSVLSVIGSD TLGSADSNTP SRSLSPVSSA ADVHGVDLNQ SEPPNPSLEE SGSTSPAVAE 240 NGSLPNVQLS MKLELFPTDN VDASGVSSEE VSARSLKLFG RTVLVTDSHR PSSPTLGTSK 300 SLPSDVKEEK PVQISTPCNF TATESASGSV EHVWDNFPYG VHPGMYFMQF QNQNSNLVEP 360 GSAYPVPWWT LCPKLPFPFI PFHKPQAVKE HFDGNLGDPK EVEKEGSWTG SDAGSVNDEE 420 NGDKCLGIET EGKEQEPNSV LQFKASANSA FSELRASPSP GKCRKGFVPY KRCLAERDTS 480 TIASEDRDGK RVDLSL* |
Expression -- UniGene ? help Back to Top | ||||||
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UniGene ID | E-value | Expressed in | ||||
Ppe.2711 | 0.0 | fruit| leaf |
Binding Motif ? help Back to Top | |||
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Motif ID | Method | Source | Motif file |
MP00515 | DAP | Transfer from AT5G17300 | Download |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Prupe.3G014900.1.p |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | Retrieve |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_020414756.1 | 0.0 | protein REVEILLE 1 isoform X1 | ||||
TrEMBL | A0A251PTI1 | 0.0 | A0A251PTI1_PRUPE; Uncharacterized protein | ||||
STRING | XP_008227906.1 | 0.0 | (Prunus mume) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Fabids | OGEF2956 | 33 | 72 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT5G17300.1 | 4e-69 | MYB_related family protein |
Link Out ? help Back to Top | |
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Phytozome | Prupe.3G014900.1.p |