PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
|
Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
---|---|---|---|---|---|---|---|---|---|
TF ID | Prupe.3G008600.3.p | ||||||||
Common Name | PRUPE_ppa008731mg | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Maloideae; Amygdaleae; Prunus
|
||||||||
Family | WRKY | ||||||||
Protein Properties | Length: 322aa MW: 35597.7 Da PI: 6.9824 | ||||||||
Description | WRKY family protein | ||||||||
Gene Model |
|
Signature Domain? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | WRKY | 108.6 | 3e-34 | 166 | 223 | 2 | 59 |
--SS-EEEEEEE--TT-SS-EEEEEE-STT---EEEEEE-SSSTTEEEEEEES--SS- CS WRKY 2 dDgynWrKYGqKevkgsefprsYYrCtsagCpvkkkversaedpkvveitYegeHnhe 59 +Dgy+WrKYGqK vk+s+fprsYYrCts+ C+vkk+vers +dp++v++tYeg+H+h+ Prupe.3G008600.3.p 166 EDGYRWRKYGQKAVKNSPFPRSYYRCTSTACNVKKRVERSFNDPSIVVTTYEGQHTHP 223 8********************************************************8 PP |
Protein Features ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PIRSF | PIRSF038130 | 2.1E-111 | 1 | 321 | IPR017396 | PWRKY transcription factor, group IIc |
Gene3D | G3DSA:2.20.25.80 | 3.1E-35 | 150 | 225 | IPR003657 | WRKY domain |
SuperFamily | SSF118290 | 1.57E-29 | 157 | 225 | IPR003657 | WRKY domain |
PROSITE profile | PS50811 | 31.869 | 160 | 225 | IPR003657 | WRKY domain |
SMART | SM00774 | 1.3E-40 | 165 | 224 | IPR003657 | WRKY domain |
Pfam | PF03106 | 7.5E-27 | 166 | 223 | IPR003657 | WRKY domain |
Gene Ontology ? help Back to Top | ||||||
---|---|---|---|---|---|---|
GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0009624 | Biological Process | response to nematode | ||||
GO:0009733 | Biological Process | response to auxin | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding | ||||
GO:0043565 | Molecular Function | sequence-specific DNA binding |
Sequence ? help Back to Top |
---|
Protein Sequence Length: 322 aa Download sequence Send to blast |
MDVKKDVVKM EDNSTNIGCG FSSSPFSGIF DFCEGEKSSS LGFMELLGAG QDFCTNSLFD 60 YLPQTPSMLP SLAPNFPKTS IMAKECSDYS LNQQPATPNS SSISSASSEA LNEEQTDNKG 120 AADQDEEEEH DQPKTKKELK AKKASQKRQR EPRFAFMTKS EVDHLEDGYR WRKYGQKAVK 180 NSPFPRSYYR CTSTACNVKK RVERSFNDPS IVVTTYEGQH THPSPLIPRP TLTASASAQP 240 NISTTFAMPS MPRTLLSHHY QQQLQPFNFC NYVNGGSPTA NASGTGFHSE RRFCTPATGS 300 AMLTDHGLLQ DIVPSHMLKQ E* |
3D Structure ? help Back to Top | ||||||
---|---|---|---|---|---|---|
PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
1wj2_A | 5e-26 | 158 | 225 | 10 | 77 | Probable WRKY transcription factor 4 |
2lex_A | 5e-26 | 158 | 225 | 10 | 77 | Probable WRKY transcription factor 4 |
Search in ModeBase |
Functional Description ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Source | Description | |||||
UniProt | Transcription factor. Interacts specifically with the W box (5'-(T)TGAC[CT]-3'), a frequently occurring elicitor-responsive cis-acting element (By similarity). {ECO:0000250}. |
Binding Motif ? help Back to Top | |||
---|---|---|---|
Motif ID | Method | Source | Motif file |
MP00069 | PBM | Transfer from AT2G47260 | Download |
Cis-element ? help Back to Top | |
---|---|
Source | Link |
PlantRegMap | Prupe.3G008600.3.p |
Regulation -- PlantRegMap ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Source | Hit ID | E-value | Description | |||
GenBank | JX112911 | 1e-113 | JX112911.1 Malus hupehensis WRKY transcription factor 23 mRNA, complete cds. |
Annotation -- Protein ? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
Source | Hit ID | E-value | Description | ||||
Refseq | XP_007221490.1 | 0.0 | probable WRKY transcription factor 23 | ||||
Swissprot | O22900 | 2e-72 | WRK23_ARATH; WRKY transcription factor 23 | ||||
TrEMBL | M5X9R3 | 0.0 | M5X9R3_PRUPE; WRKY transcription factor | ||||
STRING | EMJ22689 | 0.0 | (Prunus persica) |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Hit ID | E-value | Description | ||||
AT2G47260.1 | 1e-65 | WRKY DNA-binding protein 23 |
Link Out ? help Back to Top | |
---|---|
Phytozome | Prupe.3G008600.3.p |
Entrez Gene | 18788001 |
Publications ? help Back to Top | |||
---|---|---|---|
|