PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Prupe.3G006300.1.p
Common NamePRUPE_ppa015973mg
Organism
Prunus persica
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Maloideae; Amygdaleae; Prunus
Family MYB
Protein Properties Length: 299aa    MW: 34135.5 Da    PI: 4.7562
Description MYB family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Prupe.3G006300.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding57.72.7e-184087148
                        TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS
     Myb_DNA-binding  1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48
                        +g+WT eEd  l d+++ +G g+W++ ar+ g++Rt+k+c++rw++yl
  Prupe.3G006300.1.p 40 KGPWTVEEDSVLFDYINIHGEGRWNSLARHAGLKRTGKSCRLRWLNYL 87
                        79********************************************97 PP
2Myb_DNA-binding482.9e-1593136146
                         TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHH CS
     Myb_DNA-binding   1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqk 46 
                         rg+ T +E++l+++++ ++G++ W++Ia++++ gRt++++k++w++
  Prupe.3G006300.1.p  93 RGNITLQEQLLILQLHSRWGNR-WSKIAEYLP-GRTDNEIKNYWRT 136
                         7899******************.*********.***********96 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5129424.4433591IPR017930Myb domain
SuperFamilySSF466898.2E-3137134IPR009057Homeodomain-like
SMARTSM007178.8E-163989IPR001005SANT/Myb domain
PfamPF002495.6E-164087IPR001005SANT/Myb domain
Gene3DG3DSA:1.10.10.602.4E-224194IPR009057Homeodomain-like
CDDcd001676.78E-124287No hitNo description
SMARTSM007177.6E-1492140IPR001005SANT/Myb domain
PROSITE profilePS5129418.65692142IPR017930Myb domain
PfamPF002493.0E-1493136IPR001005SANT/Myb domain
Gene3DG3DSA:1.10.10.602.1E-2195141IPR009057Homeodomain-like
CDDcd001676.82E-7113136No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0009414Biological Processresponse to water deprivation
GO:0009651Biological Processresponse to salt stress
GO:0009723Biological Processresponse to ethylene
GO:0009737Biological Processresponse to abscisic acid
GO:0009751Biological Processresponse to salicylic acid
GO:0016036Biological Processcellular response to phosphate starvation
GO:0045893Biological Processpositive regulation of transcription, DNA-templated
GO:0046686Biological Processresponse to cadmium ion
GO:0005634Cellular Componentnucleus
GO:0001046Molecular Functioncore promoter sequence-specific DNA binding
GO:0005516Molecular Functioncalmodulin binding
Sequence ? help Back to Top
Protein Sequence    Length: 299 aa     Download sequence    Send to blast
MDMADVHVHD HVRAGYGSSA APAEIHDQIP SEEEDVDLRK GPWTVEEDSV LFDYINIHGE  60
GRWNSLARHA GLKRTGKSCR LRWLNYLRPS VRRGNITLQE QLLILQLHSR WGNRWSKIAE  120
YLPGRTDNEI KNYWRTRVQK QAKQLKCDVN SKQFQDAMRY VWIPRLIERI QALPQSLPGQ  180
SSTESTGLTT ASESQNWIDS NLMPETSGST SSESSDQLQV CSIPDPTTTD QFMNYPSTNQ  240
YGSDNGSGCY EYGTNSDFLG FEQSNYWSSS GGDISVENLW NEENIWFLQQ QLSDDQWN*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1h8a_C1e-263714224128MYB TRANSFORMING PROTEIN
Search in ModeBase
Cis-element ? help Back to Top
SourceLink
PlantRegMapPrupe.3G006300.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankKM0346642e-34KM034664.1 Jatropha curcas clone JcMYB044 MYB family protein gene, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_007221521.10.0transcription factor MYB108
TrEMBLM5XUE40.0M5XUE4_PRUPE; Uncharacterized protein
STRINGEMJ227200.0(Prunus persica)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF87534125
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G47190.15e-82myb domain protein 2