PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Prupe.2G307600.1.p | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Maloideae; Amygdaleae; Prunus
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Family | MYB_related | ||||||||
Protein Properties | Length: 108aa MW: 13055.8 Da PI: 8.055 | ||||||||
Description | MYB_related family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | Myb_DNA-binding | 28.2 | 4.5e-09 | 41 | 80 | 4 | 45 |
S-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHH CS Myb_DNA-binding 4 WTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwq 45 +T++E++ll++ ++ G++ W++Ia +++ gR ++++ +w Prupe.2G307600.1.p 41 MTEQEEDLLYRMYRLVGPR-WDLIAGRIP-GRKPEELERYWI 80 7****************99.*********.***********5 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SMART | SM00717 | 1.8E-4 | 37 | 85 | IPR001005 | SANT/Myb domain |
CDD | cd00167 | 3.33E-6 | 40 | 79 | No hit | No description |
Gene3D | G3DSA:1.10.10.60 | 8.4E-9 | 41 | 80 | IPR009057 | Homeodomain-like |
Pfam | PF00249 | 9.2E-8 | 41 | 80 | IPR001005 | SANT/Myb domain |
PROSITE profile | PS50090 | 6.377 | 42 | 79 | IPR017877 | Myb-like domain |
SuperFamily | SSF46689 | 2.5E-7 | 42 | 80 | IPR009057 | Homeodomain-like |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0010091 | Biological Process | trichome branching | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 108 aa Download sequence Send to blast |
MHDDKVWFLA QIMDRCRRKR PKTATSESDE VISNEWEFIN MTEQEEDLLY RMYRLVGPRW 60 DLIAGRIPGR KPEELERYWI MRHCDTFADK RNQQTKDNSK KCWSSNV* |
Expression -- Description ? help Back to Top | ||||||
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Source | Description | |||||
Uniprot | DEVELOPMENTAL STAGE: Ubiquitous in young leaves. Later, restricted to the leaf base in the trichome initiation zone. In mature leaves, confined to trichome cells. {ECO:0000269|PubMed:12356720}. | |||||
Uniprot | TISSUE SPECIFICITY: Expressed in roots, leaves, siliques and inflorescences. {ECO:0000269|PubMed:12356720}. |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Transcription factor. Involved in epidermal cell fate specification. Negative regulator of trichome development, including endoreplication, by lateral inhibition involving intercellular interactions. Promotes the formation of hair developing cells (trichoblasts) in H position in root epidermis, probably by inhibiting non-hair cell (atrichoblasts) formation. {ECO:0000269|PubMed:10368181, ECO:0000269|PubMed:12356720}. |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Prupe.2G307600.1.p |
Regulation -- Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | INDUCTION: Negative autoregulation. Repressed by CPC. {ECO:0000269|PubMed:12356720}. |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_021826344.1 | 2e-66 | transcription factor TRY | ||||
Swissprot | Q8GV05 | 5e-37 | TRY_ARATH; Transcription factor TRY | ||||
TrEMBL | A0A251QNW7 | 9e-75 | A0A251QNW7_PRUPE; Uncharacterized protein | ||||
STRING | EMJ20817 | 2e-65 | (Prunus persica) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Fabids | OGEF3583 | 27 | 57 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT5G53200.1 | 2e-39 | MYB_related family protein |
Link Out ? help Back to Top | |
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Phytozome | Prupe.2G307600.1.p |