PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
|
Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
---|---|---|---|---|---|---|---|---|---|
TF ID | Prupe.2G301500.1.p | ||||||||
Common Name | PRUPE_ppa008749mg | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Maloideae; Amygdaleae; Prunus
|
||||||||
Family | MYB_related | ||||||||
Protein Properties | Length: 321aa MW: 34779.3 Da PI: 9.051 | ||||||||
Description | MYB_related family protein | ||||||||
Gene Model |
|
Signature Domain? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | Myb_DNA-binding | 37 | 7.8e-12 | 60 | 104 | 1 | 47 |
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHH CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqky 47 r +W++ E++++++a +++ + Wk+I + +g +t q++s+ qky Prupe.2G301500.1.p 60 RESWSEPEHDKFLEALQLFDRD-WKKIEAFIG-SKTVIQIRSHAQKY 104 789*****************77.*********.*************9 PP |
Protein Features ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SuperFamily | SSF46689 | 2.09E-15 | 54 | 110 | IPR009057 | Homeodomain-like |
PROSITE profile | PS51294 | 13.315 | 55 | 109 | IPR017930 | Myb domain |
TIGRFAMs | TIGR01557 | 8.2E-18 | 58 | 107 | IPR006447 | Myb domain, plants |
Gene3D | G3DSA:1.10.10.60 | 1.8E-5 | 58 | 110 | IPR009057 | Homeodomain-like |
SMART | SM00717 | 2.0E-9 | 59 | 107 | IPR001005 | SANT/Myb domain |
Pfam | PF00249 | 1.4E-9 | 60 | 104 | IPR001005 | SANT/Myb domain |
CDD | cd00167 | 2.78E-7 | 62 | 105 | No hit | No description |
Gene Ontology ? help Back to Top | ||||||
---|---|---|---|---|---|---|
GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0009651 | Biological Process | response to salt stress | ||||
GO:0009723 | Biological Process | response to ethylene | ||||
GO:0009737 | Biological Process | response to abscisic acid | ||||
GO:0009739 | Biological Process | response to gibberellin | ||||
GO:0009751 | Biological Process | response to salicylic acid | ||||
GO:0009753 | Biological Process | response to jasmonic acid | ||||
GO:0046686 | Biological Process | response to cadmium ion | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
---|
Protein Sequence Length: 321 aa Download sequence Send to blast |
MVSKNPNPPE GLYLDPSGMA LPGLGPFASV TTSATTTSTT SSSEDLSKKI RKPYTITKSR 60 ESWSEPEHDK FLEALQLFDR DWKKIEAFIG SKTVIQIRSH AQKYFLKVQK NGTSEHLPPP 120 RPKRKAAHPY PQKASKNALA LPQVSGSCQS SSALHESGFI QRPDSASMLM SPVPGTVVPS 180 WTDGSMQTAN LSHESKGPTA PNNSCSSTES TPKAQPVGGT ADLVIPSHAL RVLPDFSQVY 240 SFIGSVFDPN VTGHLQKLKK MDPIDVDTVL LLMRNLSINL SSPDFEDHRK LLSSYKIDAD 300 TASHGDATKS LCDDQHKKVA * |
Functional Description ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Source | Description | |||||
UniProt | Probable transcription factor. {ECO:0000250}. |
Binding Motif ? help Back to Top | |||
---|---|---|---|
Motif ID | Method | Source | Motif file |
MP00625 | PBM | Transfer from PK02532.1 | Download |
Cis-element ? help Back to Top | |
---|---|
Source | Link |
PlantRegMap | Prupe.2G301500.1.p |
Regulation -- PlantRegMap ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Source | Hit ID | E-value | Description | |||
GenBank | DQ074476 | 0.0 | DQ074476.1 Malus x domestica MYBR5 mRNA, complete cds. |
Annotation -- Protein ? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
Source | Hit ID | E-value | Description | ||||
Refseq | XP_007218691.1 | 0.0 | protein REVEILLE 6 | ||||
Swissprot | Q8H0W3 | 1e-128 | RVE6_ARATH; Protein REVEILLE 6 | ||||
TrEMBL | M5XLG6 | 0.0 | M5XLG6_PRUPE; Uncharacterized protein | ||||
STRING | EMJ19890 | 0.0 | (Prunus persica) |
Orthologous Group ? help Back to Top | |||
---|---|---|---|
Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Fabids | OGEF1119 | 33 | 96 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Hit ID | E-value | Description | ||||
AT5G52660.1 | 1e-112 | MYB_related family protein |
Link Out ? help Back to Top | |
---|---|
Phytozome | Prupe.2G301500.1.p |
Entrez Gene | 18786768 |
Publications ? help Back to Top | |||
---|---|---|---|
|