PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Prupe.2G289500.1.p | ||||||||
Common Name | PRUPE_ppa010935mg | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Maloideae; Amygdaleae; Prunus
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Family | ERF | ||||||||
Protein Properties | Length: 230aa MW: 24976.9 Da PI: 4.8725 | ||||||||
Description | ERF family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | AP2 | 60.9 | 2.9e-19 | 66 | 116 | 1 | 55 |
AP2 1 sgykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkkleg 55 + y+GVr++ +g+Wv+e+r+p +k++r++lg+f tae+Aa+a++ a+ kl+g Prupe.2G289500.1.p 66 PVYRGVRRRN-SGKWVCEVREP---NKKTRIWLGTFPTAEMAARAHDVAAIKLRG 116 68*****888.8******9998...347*************************98 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Pfam | PF00847 | 1.0E-14 | 66 | 116 | IPR001471 | AP2/ERF domain |
PROSITE profile | PS51032 | 23.077 | 67 | 124 | IPR001471 | AP2/ERF domain |
SuperFamily | SSF54171 | 4.25E-22 | 67 | 126 | IPR016177 | DNA-binding domain |
SMART | SM00380 | 6.4E-32 | 67 | 130 | IPR001471 | AP2/ERF domain |
Gene3D | G3DSA:3.30.730.10 | 1.0E-32 | 67 | 126 | IPR001471 | AP2/ERF domain |
CDD | cd00018 | 8.46E-32 | 68 | 126 | No hit | No description |
PRINTS | PR00367 | 2.4E-9 | 68 | 79 | IPR001471 | AP2/ERF domain |
PRINTS | PR00367 | 2.4E-9 | 90 | 106 | IPR001471 | AP2/ERF domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0003677 | Molecular Function | DNA binding | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 230 aa Download sequence Send to blast |
MDGFCPYYVD PQTCGASSEV PESSSASDNS SARPVSVNFS DEELLLASTY PKKRAGRKKF 60 KETRHPVYRG VRRRNSGKWV CEVREPNKKT RIWLGTFPTA EMAARAHDVA AIKLRGRSAC 120 LNFADSAWRL PVPASANAKD IQTTASEAAE AFRPPAEGSV EVSGASAVAA SESKSASEQV 180 FYMDEEAVFG MPGLLANMAE GMLLSPPLYT EDDDDVEFYA DVPLWSYSI* |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
5wx9_A | 9e-15 | 65 | 123 | 12 | 71 | Ethylene-responsive transcription factor ERF096 |
Search in ModeBase |
Expression -- UniGene ? help Back to Top | ||||||
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UniGene ID | E-value | Expressed in | ||||
Ppe.20596 | 0.0 | fruit |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Transcriptional activator that binds specifically to the DNA sequence 5'-[AG]CCGAC-3'. Binding to the C-repeat/DRE element mediates abscisic acid- and dehydration-inducible transcription. CBF/DREB1 factors play a key role in freezing tolerance and cold acclimation. {ECO:0000269|PubMed:11798174, ECO:0000269|PubMed:12376631}. |
Binding Motif ? help Back to Top | |||
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Motif ID | Method | Source | Motif file |
MP00557 | DAP | Transfer from AT5G51990 | Download |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Prupe.2G289500.1.p |
Regulation -- Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | INDUCTION: By high-salt stress, drought stress and abscisic acid (ABA) treatment. {ECO:0000269|PubMed:11798174, ECO:0000269|PubMed:12376631}. |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | Retrieve |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | KC543502 | 0.0 | KC543502.1 Prunus persica CBF/DREB 6 mRNA, complete cds. | |||
GenBank | KC885952 | 0.0 | KC885952.1 Prunus persica C-repeat binding factor (CBF) mRNA, complete cds. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_007218312.1 | 1e-169 | dehydration-responsive element-binding protein 1A | ||||
Swissprot | Q9FJ93 | 2e-76 | DRE1D_ARATH; Dehydration-responsive element-binding protein 1D | ||||
TrEMBL | M5X208 | 1e-167 | M5X208_PRUPE; C-repeat binding factor | ||||
STRING | EMJ19511 | 1e-168 | (Prunus persica) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Fabids | OGEF243 | 33 | 224 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT5G51990.1 | 4e-75 | C-repeat-binding factor 4 |
Link Out ? help Back to Top | |
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Phytozome | Prupe.2G289500.1.p |
Entrez Gene | 18787317 |
Publications ? help Back to Top | |||
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