PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Prupe.2G273900.1.p
Common NamePRUPE_ppa016603mg
Organism
Prunus persica
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Maloideae; Amygdaleae; Prunus
Family MYB
Protein Properties Length: 304aa    MW: 34347.9 Da    PI: 5.5105
Description MYB family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Prupe.2G273900.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding41.92.2e-131055146
                        TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHH CS
     Myb_DNA-binding  1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqk 46
                        +g+WT+eEde l+  v++ G+++W++I ++  + Rt+k+c++rw +
  Prupe.2G273900.1.p 10 KGPWTAEEDEVLISHVNKCGPRDWSSIRSKGLLPRTGKSCRLRWVN 55
                        79*************************8876677**********87 PP
2Myb_DNA-binding45.51.8e-1466107346
                         SS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHH CS
     Myb_DNA-binding   3 rWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqk 46 
                         ++++eE+   +++ +q+G++ W++Ia +++ gRt++++k++w +
  Prupe.2G273900.1.p  66 KFSAEEERMVIQLQAQFGNK-WAKIATYLP-GRTDNDVKNFWST 107
                         89******************.*********.***********65 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5129415.061557IPR017930Myb domain
Gene3DG3DSA:1.10.10.602.1E-20558IPR009057Homeodomain-like
SuperFamilySSF466893.07E-298105IPR009057Homeodomain-like
SMARTSM007172.0E-12959IPR001005SANT/Myb domain
CDDcd001672.39E-121257No hitNo description
PfamPF139218.0E-141373No hitNo description
PROSITE profilePS5129421.04758113IPR017930Myb domain
Gene3DG3DSA:1.10.10.606.0E-1959111IPR009057Homeodomain-like
SMARTSM007174.5E-1363111IPR001005SANT/Myb domain
CDDcd001672.22E-1166105No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 304 aa     Download sequence    Send to blast
MERTNAYVKK GPWTAEEDEV LISHVNKCGP RDWSSIRSKG LLPRTGKSCR LRWVNKLRPN  60
LKTGSKFSAE EERMVIQLQA QFGNKWAKIA TYLPGRTDND VKNFWSTRRK RFERILQKST  120
SLQSQNNKGK SPLVRHELPE VKVPPDPCSS AIEEGTSCCN YETHNCFSNS QEFRMVPLPD  180
LVKPNLQNVE AEQPILEATP LNMISPIDSP PHYSLSQLPQ PQLDLPFLSE CKELDQDPMA  240
PDSLDMFGQE VTECESGQKF FKENAASTKL GEVKGLSIPN IVFDDFPPEM LDYLETLTSS  300
SEL*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1h8a_C1e-28511122126MYB TRANSFORMING PROTEIN
Search in ModeBase
Cis-element ? help Back to Top
SourceLink
PlantRegMapPrupe.2G273900.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_020413040.10.0transcription factor MYB6
TrEMBLA0A251QMH00.0A0A251QMH0_PRUPE; Uncharacterized protein
STRINGEMJ222720.0(Prunus persica)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF36933164
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G60460.16e-64MYB family protein