PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Prupe.2G212900.1.p | ||||||||
Common Name | PRUPE_ppa007936mg | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Maloideae; Amygdaleae; Prunus
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Family | GATA | ||||||||
Protein Properties | Length: 352aa MW: 37666.2 Da PI: 5.7828 | ||||||||
Description | GATA family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | GATA | 54.1 | 2.1e-17 | 254 | 287 | 1 | 34 |
GATA 1 CsnCgttkTplWRrgpdgnktLCnaCGlyyrkkg 34 C +C tkTp+WR gp g+ktLCnaCG++y++ + Prupe.2G212900.1.p 254 CLHCEITKTPQWRAGPMGPKTLCNACGVRYKSGR 287 99*****************************987 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PIRSF | PIRSF016992 | 2.4E-75 | 3 | 342 | IPR016679 | Transcription factor, GATA, plant |
PROSITE profile | PS50114 | 11.451 | 248 | 284 | IPR000679 | Zinc finger, GATA-type |
SMART | SM00401 | 1.8E-16 | 248 | 298 | IPR000679 | Zinc finger, GATA-type |
Gene3D | G3DSA:3.30.50.10 | 1.5E-14 | 252 | 285 | IPR013088 | Zinc finger, NHR/GATA-type |
SuperFamily | SSF57716 | 7.13E-15 | 252 | 311 | No hit | No description |
CDD | cd00202 | 4.69E-14 | 253 | 300 | No hit | No description |
PROSITE pattern | PS00344 | 0 | 254 | 279 | IPR000679 | Zinc finger, GATA-type |
Pfam | PF00320 | 4.4E-15 | 254 | 287 | IPR000679 | Zinc finger, GATA-type |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0009845 | Biological Process | seed germination | ||||
GO:0045893 | Biological Process | positive regulation of transcription, DNA-templated | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding | ||||
GO:0008270 | Molecular Function | zinc ion binding | ||||
GO:0043565 | Molecular Function | sequence-specific DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 352 aa Download sequence Send to blast |
MIGPNFIDEI DCGSFFDTID DLLDFPNDDV ESGLGPAPDC NAAFNNSLWP NQSGSLPAPN 60 DAVFSAGNSA SDLSAELSVP IEDIVQLEWL SNFVEDSFSG GSLTINKPDS FINKDTSHRQ 120 FQTSSPISVL DSSSSCSGDK NVPQSPGPVA APGKRGRARS KRPRPATFNP RSAIQLISPA 180 SSVTEAEGPQ AEPFLAPKIP SDSENFAESR PVIKIPKQAS GEQKKKKKLK VSLPLAPFEG 240 NQNSGPTQAA VRKCLHCEIT KTPQWRAGPM GPKTLCNACG VRYKSGRLFP EYRPAASPTF 300 VPSLHSNSHK KVLEMRTKGG ELVVFGETAT AMNETPELIP NTNSSISMDY M* |
Nucleic Localization Signal ? help Back to Top | |||
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No. | Start | End | Sequence |
1 | 160 | 164 | KRPRP |
Expression -- UniGene ? help Back to Top | ||||||
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UniGene ID | E-value | Expressed in | ||||
Ppe.7026 | 0.0 | fruit |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Prupe.2G212900.1.p |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_007218229.1 | 0.0 | GATA transcription factor 8 | ||||
Refseq | XP_020412658.1 | 0.0 | GATA transcription factor 8 | ||||
TrEMBL | M5XD36 | 0.0 | M5XD36_PRUPE; GATA transcription factor | ||||
STRING | EMJ19428 | 0.0 | (Prunus persica) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Fabids | OGEF4887 | 33 | 56 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT3G54810.2 | 1e-42 | GATA family protein |
Link Out ? help Back to Top | |
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Phytozome | Prupe.2G212900.1.p |
Entrez Gene | 18786779 |