PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Prupe.2G200300.5.p | ||||||||
Common Name | PRUPE_ppa004107mg | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Maloideae; Amygdaleae; Prunus
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Family | MYB_related | ||||||||
Protein Properties | Length: 461aa MW: 50407.1 Da PI: 9.0646 | ||||||||
Description | MYB_related family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | Myb_DNA-binding | 48.9 | 1.5e-15 | 24 | 68 | 1 | 47 |
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHH CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqky 47 r rWT eE+ ++++a k++G W +I +++g ++t+ q++s+ qk+ Prupe.2G200300.5.p 24 RERWTHEEHNKFLEALKLYGRA-WQRIEEHIG-TKTAVQIRSHAQKF 68 78******************88.*********.************98 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SuperFamily | SSF46689 | 9.72E-17 | 18 | 74 | IPR009057 | Homeodomain-like |
PROSITE profile | PS51294 | 20.415 | 19 | 73 | IPR017930 | Myb domain |
Gene3D | G3DSA:1.10.10.60 | 1.2E-8 | 21 | 70 | IPR009057 | Homeodomain-like |
TIGRFAMs | TIGR01557 | 7.2E-16 | 22 | 71 | IPR006447 | Myb domain, plants |
SMART | SM00717 | 2.2E-12 | 23 | 71 | IPR001005 | SANT/Myb domain |
Pfam | PF00249 | 6.4E-13 | 24 | 67 | IPR001005 | SANT/Myb domain |
CDD | cd00167 | 3.68E-9 | 26 | 69 | No hit | No description |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 461 aa Download sequence Send to blast |
MEPHSSREDL AIKARKPYTI TKQRERWTHE EHNKFLEALK LYGRAWQRIE EHIGTKTAVQ 60 IRSHAQKFFS KLEKEAHVNG VPIGQSIGID IPPPRPKRKP SNPYPRKSSS AASTCATLHV 120 GAKVGKLLSS ASSSRYKQVV DLEKEPLHER PFGEEKANNA ENQVALGNAC TLRDATNESH 180 VTIKLKGNQN LKKIDAKMIV GDNGTSGAPK SGNTNNAFHK ELVQGEKFSS LIVSSLLQNP 240 AAHAAASSTA AFWPYANAKN REDPPSMAAI AAATVTAATA WLAVHRLLPC QIDFSCSPIS 300 MTPPVPSMDT DQAPPAKRER GESSLQIPSL QDQQLDSKHT EAVEAQHSNI AKANTDDKKD 360 VASTGEVHDS NPAKSRKQVD RSSYGSNTPS DSKDETAAIE KNEKGKEEQK EPNTSHPAAE 420 SSHRRSRCVS NVYDSWKEVS EEDLKIKGHQ NDGMEDSKKS * |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Prupe.2G200300.5.p |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_020412096.1 | 0.0 | protein CCA1 isoform X4 | ||||
TrEMBL | A0A251QIU0 | 0.0 | A0A251QIU0_PRUPE; Uncharacterized protein | ||||
STRING | EMJ20198 | 0.0 | (Prunus persica) |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT2G46830.1 | 8e-54 | circadian clock associated 1 |
Link Out ? help Back to Top | |
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Phytozome | Prupe.2G200300.5.p |
Entrez Gene | 18785894 |