PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Prupe.2G200300.3.p
Common NamePRUPE_ppa004107mg
Organism
Prunus persica
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Maloideae; Amygdaleae; Prunus
Family MYB_related
Protein Properties Length: 483aa    MW: 52880 Da    PI: 9.2362
Description MYB_related family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Prupe.2G200300.3.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding48.81.6e-152468147
                        TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHH CS
     Myb_DNA-binding  1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqky 47
                        r rWT eE+ ++++a k++G   W +I +++g ++t+ q++s+ qk+
  Prupe.2G200300.3.p 24 RERWTHEEHNKFLEALKLYGRA-WQRIEEHIG-TKTAVQIRSHAQKF 68
                        78******************88.*********.************98 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF466891.05E-161874IPR009057Homeodomain-like
PROSITE profilePS5129420.4151973IPR017930Myb domain
Gene3DG3DSA:1.10.10.601.3E-82170IPR009057Homeodomain-like
TIGRFAMsTIGR015577.7E-162271IPR006447Myb domain, plants
SMARTSM007172.2E-122371IPR001005SANT/Myb domain
PfamPF002496.8E-132467IPR001005SANT/Myb domain
CDDcd001673.02E-92669No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 483 aa     Download sequence    Send to blast
MEPHSSREDL AIKARKPYTI TKQRERWTHE EHNKFLEALK LYGRAWQRIE EHIGTKTAVQ  60
IRSHAQKFFS KLEKEAHVNG VPIGQSIGID IPPPRPKRKP SNPYPRKSSS AASTCATLHV  120
GAKVGKLLSS ASSSRYKQVV DLEKEPLHER PFGEEKANNA ENQVALGNAC TLRDATNESH  180
VTIKLKGNQN LKKIDAKMIV GDNGTSGAPK SGNTNNAFHK ELVQGEKFSS LIVSSLLQNP  240
AAHAAASSTA AFWPYANAKN REDPPSMAAI AAATVTAATA WLAVHRLLPC QIDFSCSPIS  300
MTPPVPSMDT DQAPPAKRER GESSLQIPSL QDQQLDSKHT EAVEAQHSNI AKANTDDKKD  360
VASTGEVHDS NPAKSRKQVD RSSYGSNTPS DSKDETAAIE KNEKGKEEQK EPNTSHPAAE  420
SSHRRSRCVS NVYDSWKEVS EEGRLAFHAL FSRDVLPQSF SLTQDLKIKG HQNDGMEDSK  480
KS*
Cis-element ? help Back to Top
SourceLink
PlantRegMapPrupe.2G200300.3.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_020412096.10.0protein CCA1 isoform X4
TrEMBLA0A251QIJ30.0A0A251QIJ3_PRUPE; Uncharacterized protein
STRINGEMJ201980.0(Prunus persica)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G46830.11e-66circadian clock associated 1