PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Prupe.2G200300.1.p | ||||||||
Common Name | PRUPE_ppa004107mg | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Maloideae; Amygdaleae; Prunus
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Family | MYB_related | ||||||||
Protein Properties | Length: 512aa MW: 55956.3 Da PI: 8.4778 | ||||||||
Description | MYB_related family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | Myb_DNA-binding | 48.7 | 1.7e-15 | 24 | 68 | 1 | 47 |
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHH CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqky 47 r rWT eE+ ++++a k++G W +I +++g ++t+ q++s+ qk+ Prupe.2G200300.1.p 24 RERWTHEEHNKFLEALKLYGRA-WQRIEEHIG-TKTAVQIRSHAQKF 68 78******************88.*********.************98 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SuperFamily | SSF46689 | 1.12E-16 | 18 | 74 | IPR009057 | Homeodomain-like |
PROSITE profile | PS51294 | 20.415 | 19 | 73 | IPR017930 | Myb domain |
Gene3D | G3DSA:1.10.10.60 | 1.4E-8 | 21 | 70 | IPR009057 | Homeodomain-like |
TIGRFAMs | TIGR01557 | 8.4E-16 | 22 | 71 | IPR006447 | Myb domain, plants |
SMART | SM00717 | 2.2E-12 | 23 | 71 | IPR001005 | SANT/Myb domain |
Pfam | PF00249 | 7.4E-13 | 24 | 67 | IPR001005 | SANT/Myb domain |
CDD | cd00167 | 2.29E-9 | 26 | 69 | No hit | No description |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 512 aa Download sequence Send to blast |
MEPHSSREDL AIKARKPYTI TKQRERWTHE EHNKFLEALK LYGRAWQRIE EHIGTKTAVQ 60 IRSHAQKFFS KLEKEAHVNG VPIGQSIGID IPPPRPKRKP SNPYPRKSSS AASTCATLHV 120 GAKVGKLLSS ASSSRYKQVV DLEKEPLHER PFGEEKANNA ENQVANCTEV FTLLQDDHCS 180 VSSANNNSIP SQVALGNACT LRDATNESHV TIKLKGNQNL KKIDAKMIVG DNGTSGAPKS 240 GNTNNAFHKE LVQGEKFSSL IVSSLLQNPA AHAAASSTAA FWPYANAKNR EDPPSMAAIA 300 AATVTAATAW LAVHRLLPCQ IDFSCSPISM TPPVPSMDTD QAPPAKRERG ESSLQIPSLQ 360 DQQLDSKHTE AVEAQHSNIA KANTDDKKDV ASTGEVHDSN PAKSRKQVDR SSYGSNTPSD 420 SKDETAAIEK NEKGKEEQKE PNTSHPAAES SHRRSRCVSN VYDSWKEVSE EGRLAFHALF 480 SRDVLPQSFS LTQDLKIKGH QNDGMEDSKK S* |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Prupe.2G200300.1.p |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_020412094.1 | 0.0 | protein LHY isoform X2 | ||||
TrEMBL | A0A251QIH8 | 0.0 | A0A251QIH8_PRUPE; Uncharacterized protein | ||||
STRING | EMJ20198 | 0.0 | (Prunus persica) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Fabids | OGEF20442 | 2 | 2 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT2G46830.1 | 1e-69 | circadian clock associated 1 |
Link Out ? help Back to Top | |
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Phytozome | Prupe.2G200300.1.p |
Entrez Gene | 18785894 |