PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Prupe.2G192100.1.p | ||||||||
Common Name | PRUPE_ppa009439mg | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Maloideae; Amygdaleae; Prunus
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Family | MYB | ||||||||
Protein Properties | Length: 293aa MW: 33177.4 Da PI: 9.8278 | ||||||||
Description | MYB family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | Myb_DNA-binding | 50.5 | 4.8e-16 | 14 | 61 | 1 | 48 |
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48 rg+WT+ Ed ll ++++ +G g+W++ +++ g+ R++k+c++rw +yl Prupe.2G192100.1.p 14 RGPWTPREDTLLTKYIEAHGEGHWRSMPKKAGLLRCGKSCRLRWMNYL 61 89******************************99************97 PP | |||||||
2 | Myb_DNA-binding | 54.1 | 3.7e-17 | 67 | 112 | 1 | 48 |
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48 rg+ T++Ed+l+v+++ +lG++ W++Ia +++ gRt++++k++w+++l Prupe.2G192100.1.p 67 RGNITPDEDDLIVRLHSLLGNR-WSLIAGRLP-GRTDNEIKNYWNTHL 112 7999******************.*********.************996 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS51294 | 14.21 | 9 | 61 | IPR017930 | Myb domain |
SuperFamily | SSF46689 | 6.24E-30 | 11 | 108 | IPR009057 | Homeodomain-like |
SMART | SM00717 | 6.8E-13 | 13 | 63 | IPR001005 | SANT/Myb domain |
Pfam | PF00249 | 3.1E-14 | 14 | 61 | IPR001005 | SANT/Myb domain |
Gene3D | G3DSA:1.10.10.60 | 2.0E-23 | 15 | 68 | IPR009057 | Homeodomain-like |
CDD | cd00167 | 8.06E-10 | 16 | 61 | No hit | No description |
PROSITE profile | PS51294 | 27.135 | 62 | 116 | IPR017930 | Myb domain |
SMART | SM00717 | 3.5E-16 | 66 | 114 | IPR001005 | SANT/Myb domain |
Pfam | PF00249 | 2.5E-15 | 67 | 112 | IPR001005 | SANT/Myb domain |
Gene3D | G3DSA:1.10.10.60 | 1.8E-26 | 69 | 116 | IPR009057 | Homeodomain-like |
CDD | cd00167 | 1.14E-11 | 71 | 112 | No hit | No description |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 293 aa Download sequence Send to blast |
MGRAPCCSKV GLHRGPWTPR EDTLLTKYIE AHGEGHWRSM PKKAGLLRCG KSCRLRWMNY 60 LRPDIKRGNI TPDEDDLIVR LHSLLGNRWS LIAGRLPGRT DNEIKNYWNT HLSKKLRSQG 120 TDPSTHKKLS EPVVKENKRR KNQKTKNNMN KKEMVVKNKN KTGQHVEPLK PKVHLPKPTR 180 VTSFLSLQRN DSFTSSTTTT TTTTSSQDLK GGGGAFGINE NDQVLVNTRA NGIVFCVGDD 240 QDQDQVPNSA DDNDHTLENL YEEYLQALLK TDHHHDHQNQ LELDSFAESL LI* |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
1h8a_C | 1e-24 | 12 | 116 | 25 | 128 | MYB TRANSFORMING PROTEIN |
Search in ModeBase |
Expression -- Description ? help Back to Top | ||||||
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Source | Description | |||||
Uniprot | TISSUE SPECIFICITY: Expressed in anthers (PubMed:24319076, PubMed:25053018). Expressed in pollen grains and mature seeds (PubMed:25053018). Expressed in roots and vasculature of leaves (PubMed:24319076). {ECO:0000269|PubMed:24319076, ECO:0000269|PubMed:25053018}. |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Transcription factor involved in the negative regulation of flavonol biosynthesis. Represses the early phenylpropanoid genes, phenylalanine ammonia-lyase (PAL), cinnamate 4-hydroxylase (C4H) and 4-coumarate-CoA ligase (4CL), as well as the flavonoid-specific genes, flavonoid 3'-hydroxylase (F3'H) and dihydroflavonol 4-reductase (DFR) (PubMed:24319076). Plays a role in seed germination inhibition. Negatively regulates the expression of the abscisic acid (ABA) signaling transcription factor ABI5 in seeds (PubMed:25053018). {ECO:0000269|PubMed:24319076, ECO:0000269|PubMed:25053018}. |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Prupe.2G192100.1.p |
Regulation -- Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | INDUCTION: Induced by abscisic acid (ABA) and osmotic stress (PubMed:25053018). Induced by salt stress (PubMed:24319076, PubMed:25053018). {ECO:0000269|PubMed:24319076, ECO:0000269|PubMed:25053018}. |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | GU938690 | 0.0 | GU938690.1 Prunus avium R2R3-MYB transcription factor (MYBPA1) mRNA, complete cds. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_007218760.1 | 0.0 | myb-related protein 308 | ||||
Swissprot | Q42379 | 2e-69 | MYB7_ARATH; Transcription factor MYB7 | ||||
TrEMBL | M5X212 | 0.0 | M5X212_PRUPE; Uncharacterized protein | ||||
STRING | EMJ19959 | 0.0 | (Prunus persica) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Fabids | OGEF31 | 34 | 817 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G22640.1 | 2e-69 | myb domain protein 3 |
Link Out ? help Back to Top | |
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Phytozome | Prupe.2G192100.1.p |
Entrez Gene | 18785028 |