PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Prupe.2G176200.2.p | ||||||||
Common Name | PRUPE_ppa008029mg | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Maloideae; Amygdaleae; Prunus
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Family | MYB_related | ||||||||
Protein Properties | Length: 347aa MW: 37933.6 Da PI: 7.99 | ||||||||
Description | MYB_related family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | Myb_DNA-binding | 42.3 | 1.7e-13 | 78 | 122 | 1 | 47 |
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHH CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqky 47 r +WT++E++++++a +++ + Wk+I + +g +t q++s+ qky Prupe.2G176200.2.p 78 RESWTEQEHDKFLEALQLFDRD-WKKIEAFVG-SKTVIQIRSHAQKY 122 789*****************77.*********.*************9 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SuperFamily | SSF46689 | 1.27E-16 | 72 | 128 | IPR009057 | Homeodomain-like |
PROSITE profile | PS51294 | 15.408 | 73 | 127 | IPR017930 | Myb domain |
Gene3D | G3DSA:1.10.10.60 | 1.2E-6 | 76 | 128 | IPR009057 | Homeodomain-like |
TIGRFAMs | TIGR01557 | 1.6E-18 | 76 | 125 | IPR006447 | Myb domain, plants |
SMART | SM00717 | 5.3E-11 | 77 | 125 | IPR001005 | SANT/Myb domain |
Pfam | PF00249 | 2.9E-11 | 78 | 122 | IPR001005 | SANT/Myb domain |
CDD | cd00167 | 2.26E-8 | 80 | 123 | No hit | No description |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0009651 | Biological Process | response to salt stress | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 347 aa Download sequence Send to blast |
MVSVNPNPAQ GFYLFDPMNM GLPGLNSMPP PTATATTASA ATSTTACTAS STPTNATSLL 60 AEDQSKKIRK PYTITKSRES WTEQEHDKFL EALQLFDRDW KKIEAFVGSK TVIQIRSHAQ 120 KYFLKVQKKG TSEHVPPPRP KRKATHPYPQ KAPKSVVSQV AGQFQSSSAL LNGYVYQPDS 180 SFALGTPVTS ATLSSWSYNS VPPVNVSQIT KDDGRLAGPT VAHNSCYSSS NESNPTTWQM 240 SEKVDQADPG QPHRVLPDFA QVYKFIGSVF DPNATSHLER LKELDPINLE TVLLLMRNLS 300 LNLTSPEFED HRKLLSSYDA DSEKAISDSN CNFSCIGKSE NAILSA* |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Probable transcription factor. {ECO:0000250}. |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Prupe.2G176200.2.p |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | FQ381565 | 7e-72 | FQ381565.1 Vitis vinifera clone SS0ABP1YE10. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_007218242.1 | 0.0 | protein REVEILLE 3 isoform X2 | ||||
Swissprot | Q6R0H0 | 1e-112 | RVE3_ARATH; Protein REVEILLE 3 | ||||
TrEMBL | M5X1R6 | 0.0 | M5X1R6_PRUPE; Uncharacterized protein | ||||
STRING | EMJ19442 | 0.0 | (Prunus persica) |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G01520.1 | 1e-100 | MYB_related family protein |
Link Out ? help Back to Top | |
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Phytozome | Prupe.2G176200.2.p |
Entrez Gene | 18784574 |
Publications ? help Back to Top | |||
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