PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Prupe.2G176200.1.p | ||||||||
Common Name | PRUPE_ppa008029mg | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Maloideae; Amygdaleae; Prunus
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Family | MYB_related | ||||||||
Protein Properties | Length: 349aa MW: 38075.7 Da PI: 7.99 | ||||||||
Description | MYB_related family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | Myb_DNA-binding | 42.3 | 1.7e-13 | 78 | 122 | 1 | 47 |
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHH CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqky 47 r +WT++E++++++a +++ + Wk+I + +g +t q++s+ qky Prupe.2G176200.1.p 78 RESWTEQEHDKFLEALQLFDRD-WKKIEAFVG-SKTVIQIRSHAQKY 122 789*****************77.*********.*************9 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SuperFamily | SSF46689 | 1.27E-16 | 72 | 128 | IPR009057 | Homeodomain-like |
PROSITE profile | PS51294 | 15.408 | 73 | 127 | IPR017930 | Myb domain |
Gene3D | G3DSA:1.10.10.60 | 1.3E-6 | 76 | 128 | IPR009057 | Homeodomain-like |
TIGRFAMs | TIGR01557 | 1.6E-18 | 76 | 125 | IPR006447 | Myb domain, plants |
SMART | SM00717 | 5.3E-11 | 77 | 125 | IPR001005 | SANT/Myb domain |
Pfam | PF00249 | 3.0E-11 | 78 | 122 | IPR001005 | SANT/Myb domain |
CDD | cd00167 | 2.29E-8 | 80 | 123 | No hit | No description |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0009651 | Biological Process | response to salt stress | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 349 aa Download sequence Send to blast |
MVSVNPNPAQ GFYLFDPMNM GLPGLNSMPP PTATATTASA ATSTTACTAS STPTNATSLL 60 AEDQSKKIRK PYTITKSRES WTEQEHDKFL EALQLFDRDW KKIEAFVGSK TVIQIRSHAQ 120 KYFLKVQKKG TSEHVPPPRP KRKATHPYPQ KAPKSAAVVS QVAGQFQSSS ALLNGYVYQP 180 DSSFALGTPV TSATLSSWSY NSVPPVNVSQ ITKDDGRLAG PTVAHNSCYS SSNESNPTTW 240 QMSEKVDQAD PGQPHRVLPD FAQVYKFIGS VFDPNATSHL ERLKELDPIN LETVLLLMRN 300 LSLNLTSPEF EDHRKLLSSY DADSEKAISD SNCNFSCIGK SENAILSA* |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Probable transcription factor. {ECO:0000250}. |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Prupe.2G176200.1.p |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_007218243.1 | 0.0 | protein REVEILLE 3 isoform X1 | ||||
Swissprot | Q6R0H0 | 1e-110 | RVE3_ARATH; Protein REVEILLE 3 | ||||
TrEMBL | M5X057 | 0.0 | M5X057_PRUPE; Uncharacterized protein | ||||
STRING | EMJ19442 | 0.0 | (Prunus persica) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Fabids | OGEF1119 | 33 | 96 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G01520.1 | 1e-98 | MYB_related family protein |
Link Out ? help Back to Top | |
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Phytozome | Prupe.2G176200.1.p |
Entrez Gene | 18784574 |
Publications ? help Back to Top | |||
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