PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Prupe.2G129500.1.p | ||||||||
Common Name | PRUPE_ppa023698mg | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Maloideae; Amygdaleae; Prunus
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Family | ERF | ||||||||
Protein Properties | Length: 217aa MW: 23968.8 Da PI: 6.4022 | ||||||||
Description | ERF family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | AP2 | 58.6 | 1.5e-18 | 107 | 157 | 2 | 55 |
AP2 2 gykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkkleg 55 +y+GVr+++ +g+++AeIrdp +ng +r++lg++ t+e+A a+++a+ kl+g Prupe.2G129500.1.p 107 HYRGVRRRP-WGKFAAEIRDPAKNG--ARVWLGTYETPEDAGLAYDRAAFKLRG 157 7********.***********9987..*************************98 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Gene3D | G3DSA:3.30.730.10 | 1.3E-30 | 106 | 166 | IPR001471 | AP2/ERF domain |
PROSITE profile | PS51032 | 23.512 | 107 | 165 | IPR001471 | AP2/ERF domain |
SuperFamily | SSF54171 | 2.03E-22 | 107 | 166 | IPR016177 | DNA-binding domain |
Pfam | PF00847 | 6.5E-13 | 107 | 157 | IPR001471 | AP2/ERF domain |
SMART | SM00380 | 3.0E-36 | 107 | 171 | IPR001471 | AP2/ERF domain |
CDD | cd00018 | 2.77E-30 | 107 | 167 | No hit | No description |
PRINTS | PR00367 | 4.3E-13 | 108 | 119 | IPR001471 | AP2/ERF domain |
PRINTS | PR00367 | 4.3E-13 | 147 | 167 | IPR001471 | AP2/ERF domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0003677 | Molecular Function | DNA binding | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 217 aa Download sequence Send to blast |
MYGETTLELE SDLAFLESIR HHLLDDLEPQ AMSFTGNNVP VIFPLFVTEN GWESSLKTEH 60 VDNDVQGMLG ALNDVNYVGC VVSDDKIELK EQKVAARAVH PPSEERHYRG VRRRPWGKFA 120 AEIRDPAKNG ARVWLGTYET PEDAGLAYDR AAFKLRGCKA KLNFPHLIGS SNVEPVRVNP 180 KRRRSLDLSS SSSSSDNGSP KPKLSKDGVD DNHLAA* |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
2gcc_A | 6e-32 | 103 | 171 | 1 | 69 | ATERF1 |
3gcc_A | 6e-32 | 103 | 171 | 1 | 69 | ATERF1 |
Search in ModeBase |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Prupe.2G129500.1.p |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_007203094.1 | 1e-160 | ethylene-responsive transcription factor 1A | ||||
TrEMBL | M5W4U8 | 1e-159 | M5W4U8_PRUPE; Uncharacterized protein | ||||
STRING | EMJ04293 | 1e-159 | (Prunus persica) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Fabids | OGEF512 | 33 | 157 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT2G44840.1 | 6e-44 | ethylene-responsive element binding factor 13 |
Link Out ? help Back to Top | |
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Phytozome | Prupe.2G129500.1.p |
Entrez Gene | 18771055 |