PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Prupe.2G109500.1.p
Organism
Prunus persica
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Maloideae; Amygdaleae; Prunus
Family M-type_MADS
Protein Properties Length: 160aa    MW: 18255.2 Da    PI: 9.7127
Description M-type_MADS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Prupe.2G109500.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1SRF-TF565.2e-181152344
                        --SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-TTS CS
              SRF-TF  3 ienksnrqvtfskRrngilKKAeELSvLCdaevaviifsstg 44
                        i+n+  r++tf kR+ g++KK +ELS+LC+++++ +i+++++
  Prupe.2G109500.1.p 11 IKNDVARKTTFKKRKSGLMKKVSELSILCGTDACAVIYGQHQ 52
                        9**************************************875 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5006617.128150IPR002100Transcription factor, MADS-box
SuperFamilySSF554551.57E-20183IPR002100Transcription factor, MADS-box
SMARTSM004322.3E-17160IPR002100Transcription factor, MADS-box
CDDcd002666.14E-23285No hitNo description
PRINTSPR004046.7E-9323IPR002100Transcription factor, MADS-box
PfamPF003191.1E-171151IPR002100Transcription factor, MADS-box
PRINTSPR004046.7E-92338IPR002100Transcription factor, MADS-box
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 160 aa     Download sequence    Send to blast
MTRKQIDLAY IKNDVARKTT FKKRKSGLMK KVSELSILCG TDACAVIYGQ HQANPDVSPC  60
PDGALRTITR FKQMSKMERS RNILNQESFL RQTIFKADEK LKKQMSDNQE KEMMIQAIYG  120
SLPADWLQKL SHVDLNDLWL SVEKNIEAIA EMMTSLEKP*
Cis-element ? help Back to Top
SourceLink
PlantRegMapPrupe.2G109500.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_007221099.21e-116agamous-like MADS-box protein AGL80
TrEMBLA0A1L5YEJ31e-115A0A1L5YEJ3_PRUPE; MADS-box protein 31
STRINGEMJ222981e-101(Prunus persica)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF1782336
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G48670.11e-33AGAMOUS-like 80