PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Prupe.2G054600.1.p | ||||||||
Common Name | PRUPE_ppa024874mg | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Maloideae; Amygdaleae; Prunus
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Family | C2H2 | ||||||||
Protein Properties | Length: 244aa MW: 28172.9 Da PI: 10.6204 | ||||||||
Description | C2H2 family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | zf-C2H2 | 16.1 | 3.3e-05 | 127 | 148 | 2 | 23 |
EETTTTEEESSHHHHHHHHHHT CS zf-C2H2 2 kCpdCgksFsrksnLkrHirtH 23 +C Cg++F +++ L +H + H Prupe.2G054600.1.p 127 VCRVCGRRFYTNEKLLNHFKIH 148 6*****************9998 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS50157 | 10.658 | 126 | 153 | IPR007087 | Zinc finger, C2H2 |
SuperFamily | SSF57667 | 5.38E-5 | 126 | 152 | No hit | No description |
Gene3D | G3DSA:3.30.160.60 | 8.2E-4 | 127 | 150 | IPR013087 | Zinc finger C2H2-type/integrase DNA-binding domain |
PROSITE pattern | PS00028 | 0 | 128 | 148 | IPR007087 | Zinc finger, C2H2 |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0003676 | Molecular Function | nucleic acid binding | ||||
GO:0046872 | Molecular Function | metal ion binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 244 aa Download sequence Send to blast |
MLKHLKFHHI FCTVQSKRSE TLNPFTLLIR YCHFQSEPGF NSSSPTSCLP PQKIPEIAIF 60 WDLDTKPPKS VSPYEAAVKL KTAASSFRLV RHMIAYANRH ALDYVPQVVR ERKERNRVVI 120 RDGELNVCRV CGRRFYTNEK LLNHFKIHEK EHMKRLSQIE SARGSRRVKL VGKYSMKMEK 180 YKNAARDVLT PKAGRGLADE VKRAGFWVRS VVDKPQRADA ALRNHIVDMM DHRRAECLML 240 CVG* |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Prupe.2G054600.1.p |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_021810266.1 | 1e-159 | uncharacterized protein LOC110753638 | ||||
TrEMBL | A0A251QBR0 | 0.0 | A0A251QBR0_PRUPE; Uncharacterized protein | ||||
STRING | EMJ20828 | 1e-180 | (Prunus persica) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Fabids | OGEF7500 | 25 | 33 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT4G12240.1 | 1e-74 | C2H2 family protein |
Link Out ? help Back to Top | |
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Phytozome | Prupe.2G054600.1.p |
Entrez Gene | 18787627 |