PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Prupe.2G054400.1.p | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Maloideae; Amygdaleae; Prunus
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Family | C2H2 | ||||||||
Protein Properties | Length: 285aa MW: 32821.3 Da PI: 10.2967 | ||||||||
Description | C2H2 family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | zf-C2H2 | 15.8 | 4.1e-05 | 127 | 148 | 2 | 23 |
EETTTTEEESSHHHHHHHHHHT CS zf-C2H2 2 kCpdCgksFsrksnLkrHirtH 23 +C Cg++F +++ L +H + H Prupe.2G054400.1.p 127 VCRVCGRRFYTNEKLLNHFKIH 148 6*****************9998 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS50157 | 10.658 | 126 | 153 | IPR007087 | Zinc finger, C2H2 |
SuperFamily | SSF57667 | 6.77E-5 | 126 | 152 | No hit | No description |
Gene3D | G3DSA:3.30.160.60 | 0.001 | 127 | 150 | IPR013087 | Zinc finger C2H2-type/integrase DNA-binding domain |
PROSITE pattern | PS00028 | 0 | 128 | 148 | IPR007087 | Zinc finger, C2H2 |
CDD | cd06167 | 0.00474 | 177 | 246 | No hit | No description |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0003676 | Molecular Function | nucleic acid binding | ||||
GO:0046872 | Molecular Function | metal ion binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 285 aa Download sequence Send to blast |
MLKHLKFHHI FCTVQSKRSE TLNPFTLLIR YCHFQSEPGF NSSSPTSCLP PEKIPEIAIF 60 WDLDTKPPKS VSPYEAAVKL KTAASSFRLV RHMIAYANRH ALDYVPQVVR ERKERNRVVI 120 RDGELNVCRV CGRRFYTNEK LLNHFKIHEK EHMKRLSQIE SARGSRRVKL VGKYSMKMEK 180 YKNAARDVLT PKAGRGLADE RADAALRNHI VDMMDHRRAE CLMLVSDDLD FVDVVMEAKL 240 RCLKTVKVAD SGFSWNEILI GKAKKEAVSV VGKWKDRDVL KRLE* |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Prupe.2G054400.1.p |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_021810266.1 | 0.0 | uncharacterized protein LOC110753638 | ||||
TrEMBL | A0A251QEZ1 | 0.0 | A0A251QEZ1_PRUPE; Uncharacterized protein | ||||
STRING | EMJ21564 | 0.0 | (Prunus persica) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Fabids | OGEF7500 | 25 | 33 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT4G12240.1 | 8e-81 | C2H2 family protein |
Link Out ? help Back to Top | |
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Phytozome | Prupe.2G054400.1.p |