PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Prupe.2G047600.1.p

Common Name

PRUPE_ppa008839mg

Organism

Prunus persica

Taxonomic ID

3760

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Maloideae; Amygdaleae; Prunus

Family

NF-YC

Protein Properties

Length: 318aa MW: 34263.8 Da PI: 4.9867

Description

NF-YC family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Prupe.2G047600.1.p	genome	JGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	NF-YC	61.8	1.4e-19	6	86	18	98
NF-YC 18 nhelPlarikkilkadedvkmisaeaPvllskacelfileltlrswlhaeenkrrtlkksdiaaavtrtdifdflvdivpr 98 ++++P arikki++adedv +i+ +Pvl+ska elf+ +l r++ + + +t++ ++ +v++ ++fdfl div r Prupe.2G047600.1.p 6 DTRFPAARIKKIMQADEDVGKIALAVPVLVSKALELFLQDLCDRTYEITLQRGAKTMNAVHLKHCVQSYNVFDFLRDIVSR 86 5789**************************************************************************987 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Gene3D	G3DSA:1.10.20.10	3.4E-26	3	72	IPR009072	Histone-fold
SuperFamily	SSF47113	8.2E-21	4	89	IPR009072	Histone-fold
Pfam	PF00808	2.5E-19	8	71	IPR003958	Transcription factor CBF/NF-Y/archaeal histone domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0005634	Cellular Component	nucleus
GO:0005829	Cellular Component	cytosol
GO:0046982	Molecular Function	protein heterodimerization activity

Sequence ? help Back to Top
Protein Sequence Length: 318 aa Download sequence Send to blast
MRKKLDTRFP AARIKKIMQA DEDVGKIALA VPVLVSKALE LFLQDLCDRT YEITLQRGAK 60 TMNAVHLKHC VQSYNVFDFL RDIVSRVPDY GHGHSDAAGE DRAISKRRKP PGDECIDSDE 120 ELKRSKMLEV NHGSSSGRGR GRGRGRGRGR GRASERETLH HETESEPCTS LQHATKPNPN 180 PGMVVDDASE SKEEMKENAV IPDESDPAVR NFDLNADVIE NEDTKAAATA AQAATAAQAS 240 STATQAAATA SQAAATASQA AATAAPTSSA GPTSEIKHEE YPGWSLSDVD KMAIDPLQLA 300 HLSGRIDEDE EDYDEEG*

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
1jfi_A	9e-23	2	72	5	75	Transcription Regulator NC2 alpha chain
Search in ModeBase

Nucleic Localization Signal ? help Back to Top

No.	Start	End	Sequence
1	141	151	RGRGRGRGRGR
2	143	152	RGRGRGRGRA

Cis-element ? help Back to Top
Source	Link
PlantRegMap	Prupe.2G047600.1.p

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_007218701.1	0.0	dr1-associated corepressor homolog
TrEMBL	M5XLH5	0.0	M5XLH5_PRUPE; Uncharacterized protein
STRING	EMJ19900	0.0	(Prunus persica)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Fabids	OGEF1728	34	91

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT3G12480.1	6e-76	nuclear factor Y, subunit C11

Link Out ? help Back to Top
Phytozome	Prupe.2G047600.1.p
Entrez Gene	18786464