PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Prupe.1G551400.2.p
Common NamePRUPE_ppa008906mg
Organism
Prunus persica
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Maloideae; Amygdaleae; Prunus
Family MYB_related
Protein Properties Length: 275aa    MW: 30918.6 Da    PI: 8.6415
Description MYB_related family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Prupe.1G551400.2.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding605.2e-192670147
                        TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHH CS
     Myb_DNA-binding  1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqky 47
                        rg++T+eEdel+++++ +lG++ W++Ia +++ gRt++++k++w+++
  Prupe.1G551400.2.p 26 RGNFTEEEDELIIKLHSLLGNK-WSLIAGRLP-GRTDNEIKNYWNTH 70
                        89********************.*********.************97 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS500904.159120IPR017877Myb-like domain
Gene3DG3DSA:1.10.10.605.0E-12733IPR009057Homeodomain-like
SuperFamilySSF466896.74E-23778IPR009057Homeodomain-like
PROSITE profilePS5129429.4272175IPR017930Myb domain
SMARTSM007174.6E-182573IPR001005SANT/Myb domain
PfamPF002493.5E-172670IPR001005SANT/Myb domain
CDDcd001671.17E-132871No hitNo description
Gene3DG3DSA:1.10.10.607.5E-253472IPR009057Homeodomain-like
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0009611Biological Processresponse to wounding
GO:0009651Biological Processresponse to salt stress
GO:0009737Biological Processresponse to abscisic acid
GO:0009751Biological Processresponse to salicylic acid
GO:0090378Biological Processseed trichome elongation
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 275 aa     Download sequence    Send to blast
MPVGLLRCGK SCRLRWINYL RPDLKRGNFT EEEDELIIKL HSLLGNKWSL IAGRLPGRTD  60
NEIKNYWNTH IKRKLISRGL DPQTHRPLND TTTAAAAAAA TTPASRLDFR NISPPSAVVD  120
KTTNKNSILH HKTINKTSSN NNNHNSNIVL FKPKMEEDNI EEASSGTTTE EDQQQQQQQQ  180
QKLQDHYMYK CSDLNLDLSI GLEPFQSEPT RASSGNSAES RLQQNNYQVF GTVHKAGVTQ  240
AVCLCCQVGF QSSEACRNCQ CTNGFYRFHR PLNS*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1a5j_A3e-2277540108B-MYB
Search in ModeBase
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00053PBMTransfer from AT1G22640Download
Motif logo
Cis-element ? help Back to Top
SourceLink
PlantRegMapPrupe.1G551400.2.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankKT1592360.0KT159236.1 Prunus persica R2R3-MYB transcription factor (MYB20) mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_007222954.10.0transcription repressor MYB6
TrEMBLM5XE080.0M5XE08_PRUPE; Uncharacterized protein
STRINGEMJ241530.0(Prunus persica)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G22640.11e-62myb domain protein 3